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  5. Cpa|evm.model.tig00021127.172

Cpa|evm.model.tig00021127.172 (TOP6B, BIN3, HYP6,...)


Aliases : TOP6B, BIN3, HYP6, RHL3, ATTOP6B

Description : DNA topoisomerase 6 subunit B OS=Oryza sativa subsp. indica


Gene families : OG0006857 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006857_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00021127.172
Cluster HCCA: Cluster_59

Target Alias Description ECC score Gene Family Method Actions
Aev_g05386 TOP6B, BIN3,... component *(TOP6B) of somatic DNA topoisomerase VI... 0.02 OrthoFinder output from all 47 species
Aob_g06656 TOP6B, BIN3,... component *(TOP6B) of somatic DNA topoisomerase VI... 0.02 OrthoFinder output from all 47 species
Azfi_s0003.g007865 TOP6B, BIN3,... component *(TOP6B) of somatic DNA topoisomerase VI... 0.02 OrthoFinder output from all 47 species
Ore_g12121 TOP6B, BIN3,... component *(TOP6B) of somatic DNA topoisomerase VI... 0.02 OrthoFinder output from all 47 species
Tin_g05199 TOP6B, BIN3,... component *(TOP6B) of somatic DNA topoisomerase VI... 0.01 OrthoFinder output from all 47 species
Zm00001e033688_P003 TOP6B, BIN3,... DNA topoisomerase 6 subunit B OS=Oryza sativa subsp.... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEA Interproscan
BP GO:0006265 DNA topological change IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR015320 TopoVI_B_transducer 456 501
No external refs found!