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  5. Cpa|evm.model.tig00021108.27

Cpa|evm.model.tig00021108.27 (HTA9)


Aliases : HTA9

Description : Chromatin organisation.histones.H2A-type histone


Gene families : OG0001447 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001447_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00021108.27

Target Alias Description ECC score Gene Family Method Actions
AT3G54560 HTA11 histone H2A 11 0.02 OrthoFinder output from all 47 species
Als_g18970 HTA9 histone *(H2A) & original description: none 0.01 OrthoFinder output from all 47 species
Als_g44636 HTA9 histone *(H2A) & original description: none 0.01 OrthoFinder output from all 47 species
Azfi_s0002.g001167 HTA9 histone *(H2A) & original description: CDS=274-711 0.04 OrthoFinder output from all 47 species
Ceric.12G065200.1 HTA9, Ceric.12G065200 histone *(H2A) & original description: pacid=50601775... 0.01 OrthoFinder output from all 47 species
Dac_g24047 HTA9 histone *(H2A) & original description: none 0.01 OrthoFinder output from all 47 species
GSVIVT01003139001 HTA11 Chromatin organisation.histones.H2A-type histone 0.05 OrthoFinder output from all 47 species
LOC_Os03g06670.1 HTA11, LOC_Os03g06670 histone (H2A) 0.03 OrthoFinder output from all 47 species
LOC_Os10g28230.1 HTA11, LOC_Os10g28230 histone (H2A) 0.06 OrthoFinder output from all 47 species
Len_g22206 HTA9 histone *(H2A) & original description: none 0.07 OrthoFinder output from all 47 species
Pp3c3_27030V3.1 HTA9, Pp3c3_27030 histone H2A protein 9 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0129.g021979 HTA9 histone *(H2A) & original description: CDS=86-490 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0229.g026402 HTA9 histone *(H2A) & original description: CDS=1-300 0.01 OrthoFinder output from all 47 species
Solyc06g084090.4.1 HTA11, Solyc06g084090 histone (H2A) 0.02 OrthoFinder output from all 47 species
Solyc09g065755.1.1 HTA11, Solyc09g065755 histone (H2A) 0.02 OrthoFinder output from all 47 species
Spa_g40658 HTA9 histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e005636_P001 HTA8, Zm00001e005636 histone (H2A) 0.03 OrthoFinder output from all 47 species
Zm00001e012057_P001 HTA8, Zm00001e012057 histone (H2A) 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019207 kinase regulator activity IEP HCCA
MF GO:0019887 protein kinase regulator activity IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 6 93
IPR032454 Histone_H2A_C 94 123
No external refs found!