Cpa|evm.model.tig00020952.7 (PGP2)

Aliases : PGP2

Description : ABC transporter B family member 2 OS=Arabidopsis thaliana

Gene families : OG0000048 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cpa\|evm.model.tig00020952.7

Target	Alias	Description	ECC score	Gene Family Method
AT4G01820	PGP3, MDR3	P-glycoprotein 3	0.02	OrthoFinder output from all 47 species
Als_g51333	ABCB19,...	subfamily ABCB transporter & original description: none	0.01	OrthoFinder output from all 47 species
Aspi01Gene12320.t1	PGP2, Aspi01Gene12320	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene42794.t3	PGP3, MDR3,...	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Aspi01Gene62054.t1	ABCB19,...	subfamily ABCB transporter & original description: none	0.01	OrthoFinder output from all 47 species
Dac_g35769	PGP11	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Dcu_g08511	PGP11	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Dde_g08514	ABCB19,...	subfamily ABCB transporter & original description: none	0.01	OrthoFinder output from all 47 species
Dde_g19409	ABCB19,...	subfamily ABCB transporter & original description: none	0.01	OrthoFinder output from all 47 species
Ehy_g02960	PGP13	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Gb_32127	PGP11	subfamily ABCB transporter	0.01	OrthoFinder output from all 47 species
Lfl_g08040	ABCB19,...	subfamily ABCB transporter & original description: none	0.01	OrthoFinder output from all 47 species
Lfl_g27273	ATPGP4, PGP4, ABCB4, MDR4	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g40244	PGP11	not classified & original description: none	0.01	OrthoFinder output from all 47 species
MA_6958g0010	PGP21	ABC transporter B family member 21 OS=Arabidopsis...	0.01	OrthoFinder output from all 47 species
Msp_g13353	PGP13	subfamily ABCB transporter & original description: none	0.01	OrthoFinder output from all 47 species
Ore_g33236	ABCB19,...	ABC-B-type transporter *(AMN3) & original description: none	0.01	OrthoFinder output from all 47 species
Pir_g26459	ABCB19,...	subfamily ABCB transporter & original description: none	0.01	OrthoFinder output from all 47 species
Pir_g57081	PGP13	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g05161	PGP20	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Sam_g27139	No alias	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Smo123936	ATPGP4, PGP4, ABCB4, MDR4	Solute transport.primary active transport.ABC...	0.01	OrthoFinder output from all 47 species
Smo176522	ATPGP4, PGP4, ABCB4, MDR4	Solute transport.primary active transport.ABC...	0.01	OrthoFinder output from all 47 species
Smo92485	ABCB19,...	Solute transport.primary active transport.ABC...	0.01	OrthoFinder output from all 47 species
Solyc05g013890.3.1	Solyc05g013890	subfamily ABCB transporter	0.01	OrthoFinder output from all 47 species
Spa_g00479	PGP20	subfamily ABCB transporter & original description: none	0.01	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
MF	GO:0005215	transporter activity	IEP	HCCA
MF	GO:0005319	lipid transporter activity	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
BP	GO:0006298	mismatch repair	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0006810	transport	IEP	HCCA
BP	GO:0006869	lipid transport	IEP	HCCA
MF	GO:0008168	methyltransferase activity	IEP	HCCA
BP	GO:0009987	cellular process	IEP	HCCA
MF	GO:0015399	primary active transmembrane transporter activity	IEP	HCCA
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
BP	GO:0017038	protein import	IEP	HCCA
MF	GO:0030983	mismatched DNA binding	IEP	HCCA
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA
BP	GO:0055085	transmembrane transport	IEP	HCCA
BP	GO:0061024	membrane organization	IEP	HCCA
BP	GO:0071702	organic substance transport	IEP	HCCA
BP	GO:0120009	intermembrane lipid transfer	IEP	HCCA
MF	GO:0120013	lipid transfer activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003439	ABC_transporter-like_ATP-bd	321	395

External Links

No external refs found!

Cpa|evm.model.tig00020952.7 (PGP2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation