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  5. Cpa|evm.model.tig00020693.8

Cpa|evm.model.tig00020693.8


Description : RNA processing.RNA splicing.spliceosome-associated non-snRNP MOS4-associated complex (MAC).associated components.SYF2 component


Gene families : OG0003956 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003956_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00020693.8
Cluster HCCA: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
AT2G16860 No alias GCIP-interacting family protein 0.03 OrthoFinder output from all 47 species
Aev_g23659 No alias component *(SYF2) of MAC spliceosome-associated complex... 0.02 OrthoFinder output from all 47 species
Aob_g10008 No alias component *(SYF2) of MAC spliceosome-associated complex... 0.01 OrthoFinder output from all 47 species
Cre01.g037400 No alias Protein modification.protein folding and quality... 0.02 OrthoFinder output from all 47 species
Dac_g17179 No alias component *(SYF2) of MAC spliceosome-associated complex... 0.02 OrthoFinder output from all 47 species
Dde_g04723 No alias component *(SYF2) of MAC spliceosome-associated complex... 0.01 OrthoFinder output from all 47 species
Gb_07136 No alias component SYF2 of non-snRNP MOS4-associated complex 0.02 OrthoFinder output from all 47 species
Mp4g10260.1 No alias component SYF2 of non-snRNP MOS4-associated complex 0.03 OrthoFinder output from all 47 species
Ore_g15334 No alias component *(SYF2) of MAC spliceosome-associated complex... 0.02 OrthoFinder output from all 47 species
Pnu_g07421 No alias component *(SYF2) of MAC spliceosome-associated complex... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0023.g008774 No alias component *(SYF2) of MAC spliceosome-associated complex... 0.01 OrthoFinder output from all 47 species
Solyc10g055640.2.1 Solyc10g055640 component SYF2 of non-snRNP MOS4-associated complex 0.03 OrthoFinder output from all 47 species
Zm00001e013248_P002 Zm00001e013248 component SYF2 of non-snRNP MOS4-associated complex 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
CC GO:0005929 cilium IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006405 RNA export from nucleus IEP HCCA
BP GO:0006406 mRNA export from nucleus IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0007021 tubulin complex assembly IEP HCCA
BP GO:0007023 post-chaperonin tubulin folding pathway IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
CC GO:0008541 proteasome regulatory particle, lid subcomplex IEP HCCA
BP GO:0015931 nucleobase-containing compound transport IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
CC GO:0031514 motile cilium IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0042995 cell projection IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043248 proteasome assembly IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
MF GO:0048487 beta-tubulin binding IEP HCCA
BP GO:0048870 cell motility IEP HCCA
BP GO:0050657 nucleic acid transport IEP HCCA
BP GO:0050658 RNA transport IEP HCCA
BP GO:0051028 mRNA transport IEP HCCA
BP GO:0051168 nuclear export IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051236 establishment of RNA localization IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
CC GO:0120025 plasma membrane bounded cell projection IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR013260 mRNA_splic_SYF2 117 252
No external refs found!