Coexpression cluster: Cluster_23 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0016272 prefoldin complex 3.19% (3/94) 8.04 0.0 8e-06
GO:0006457 protein folding 4.26% (4/94) 6.04 0.0 2.6e-05
GO:0051082 unfolded protein binding 3.19% (3/94) 6.04 1.1e-05 0.000584
GO:0032991 protein-containing complex 8.51% (8/94) 2.73 2.9e-05 0.001101
GO:0006352 DNA-templated transcription initiation 3.19% (3/94) 5.45 4.2e-05 0.001278
GO:0006367 transcription initiation at RNA polymerase II promoter 2.13% (2/94) 6.72 0.000142 0.003108
GO:0032774 RNA biosynthetic process 4.26% (4/94) 3.97 0.000125 0.003199
GO:0090575 RNA polymerase II transcription regulator complex 2.13% (2/94) 6.23 0.000297 0.005052
GO:0016070 RNA metabolic process 6.38% (6/94) 2.75 0.000275 0.005268
GO:0005667 transcription regulator complex 2.13% (2/94) 5.58 0.000771 0.01179
GO:0140513 nuclear protein-containing complex 3.19% (3/94) 3.89 0.001089 0.015149
GO:0034654 nucleobase-containing compound biosynthetic process 5.32% (5/94) 2.66 0.001207 0.015387
GO:0005575 cellular_component 10.64% (10/94) 1.61 0.001646 0.019369
GO:0018130 heterocycle biosynthetic process 5.32% (5/94) 2.43 0.002384 0.024316
GO:0019438 aromatic compound biosynthetic process 5.32% (5/94) 2.44 0.002342 0.025592
GO:1901362 organic cyclic compound biosynthetic process 5.32% (5/94) 2.37 0.002884 0.025959
GO:0009059 macromolecule biosynthetic process 4.26% (4/94) 2.72 0.003216 0.027339
GO:1990904 ribonucleoprotein complex 2.13% (2/94) 4.65 0.00287 0.027447
GO:0008541 proteasome regulatory particle, lid subcomplex 1.06% (1/94) 8.04 0.003805 0.030643
GO:0043101 purine-containing compound salvage 1.06% (1/94) 7.04 0.007596 0.037492
GO:0046102 inosine metabolic process 1.06% (1/94) 7.04 0.007596 0.037492
GO:0046103 inosine biosynthetic process 1.06% (1/94) 7.04 0.007596 0.037492
GO:0050483 IMP 5'-nucleotidase activity 1.06% (1/94) 7.04 0.007596 0.037492
GO:0046129 purine ribonucleoside biosynthetic process 1.06% (1/94) 7.04 0.007596 0.037492
GO:0046128 purine ribonucleoside metabolic process 1.06% (1/94) 7.04 0.007596 0.037492
GO:0042278 purine nucleoside metabolic process 1.06% (1/94) 7.04 0.007596 0.037492
GO:0042451 purine nucleoside biosynthetic process 1.06% (1/94) 7.04 0.007596 0.037492
GO:0006190 inosine salvage 1.06% (1/94) 7.04 0.007596 0.037492
GO:0005672 transcription factor TFIIA complex 1.06% (1/94) 7.04 0.007596 0.037492
GO:0006166 purine ribonucleoside salvage 1.06% (1/94) 7.04 0.007596 0.037492
GO:0003682 chromatin binding 1.06% (1/94) 7.04 0.007596 0.037492
GO:0008253 5'-nucleotidase activity 1.06% (1/94) 6.45 0.011373 0.039547
GO:0051236 establishment of RNA localization 1.06% (1/94) 6.45 0.011373 0.039547
GO:0006406 mRNA export from nucleus 1.06% (1/94) 6.45 0.011373 0.039547
GO:0005681 spliceosomal complex 1.06% (1/94) 6.45 0.011373 0.039547
GO:0006405 RNA export from nucleus 1.06% (1/94) 6.45 0.011373 0.039547
GO:0005669 transcription factor TFIID complex 1.06% (1/94) 6.45 0.011373 0.039547
GO:0008252 nucleotidase activity 1.06% (1/94) 6.45 0.011373 0.039547
GO:0051028 mRNA transport 1.06% (1/94) 6.45 0.011373 0.039547
GO:0050658 RNA transport 1.06% (1/94) 6.45 0.011373 0.039547
GO:0051168 nuclear export 1.06% (1/94) 6.45 0.011373 0.039547
GO:0050657 nucleic acid transport 1.06% (1/94) 6.45 0.011373 0.039547
GO:0090304 nucleic acid metabolic process 6.38% (6/94) 1.77 0.008377 0.040054
GO:0044271 cellular nitrogen compound biosynthetic process 5.32% (5/94) 1.98 0.008822 0.0409
GO:0003676 nucleic acid binding 7.45% (7/94) 1.48 0.013126 0.043657
GO:0006139 nucleobase-containing compound metabolic process 7.45% (7/94) 1.48 0.013126 0.043657
GO:0043094 cellular metabolic compound salvage 1.06% (1/94) 6.04 0.015136 0.044534
GO:0019843 rRNA binding 1.06% (1/94) 6.04 0.015136 0.044534
GO:0043248 proteasome assembly 1.06% (1/94) 6.04 0.015136 0.044534
GO:0043174 nucleoside salvage 1.06% (1/94) 6.04 0.015136 0.044534
GO:0006913 nucleocytoplasmic transport 1.06% (1/94) 6.04 0.015136 0.044534
GO:0051169 nuclear transport 1.06% (1/94) 6.04 0.015136 0.044534
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Abrodictyum obscurum HCCA Cluster_153 0.017 OrthoFinder output from all 47 species Compare
Actinostachys digitata HCCA Cluster_367 0.024 OrthoFinder output from all 47 species Compare
Adiantum latifolium HCCA Cluster_54 0.025 OrthoFinder output from all 47 species Compare
Adiantum latifolium HCCA Cluster_136 0.018 OrthoFinder output from all 47 species Compare
Alsophila latebrosa HCCA Cluster_124 0.016 OrthoFinder output from all 47 species Compare
Alsophila latebrosa HCCA Cluster_250 0.029 OrthoFinder output from all 47 species Compare
Amblovenatum opulentum HCCA Cluster_96 0.02 OrthoFinder output from all 47 species Compare
Amblovenatum opulentum HCCA Cluster_261 0.015 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_17 0.016 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_110 0.022 OrthoFinder output from all 47 species Compare
Amborella trichopoda HCCA Cluster_85 0.018 OrthoFinder output from all 47 species Compare
Chlamydomonas reinhardtii HCCA Cluster_73 0.029 OrthoFinder output from all 47 species Compare
Chlamydomonas reinhardtii HCCA Cluster_75 0.023 OrthoFinder output from all 47 species Compare
Ceratopteris richardii HCCA Cluster_121 0.019 OrthoFinder output from all 47 species Compare
Diplazium proliferum (Lam.) Kaulf. HCCA Cluster_121 0.017 OrthoFinder output from all 47 species Compare
Dicranopteris curranii HCCA Cluster_139 0.023 OrthoFinder output from all 47 species Compare
Ginkgo biloba HCCA Cluster_98 0.019 OrthoFinder output from all 47 species Compare
Microlepia speluncae HCCA Cluster_61 0.017 OrthoFinder output from all 47 species Compare
Microlepia speluncae HCCA Cluster_176 0.016 OrthoFinder output from all 47 species Compare
Marchantia polymorpha HCCA Cluster_56 0.022 OrthoFinder output from all 47 species Compare
Ophioglossum reticulatum HCCA Cluster_158 0.016 OrthoFinder output from all 47 species Compare
Oryza sativa HCCA Cluster_58 0.031 OrthoFinder output from all 47 species Compare
Oryza sativa HCCA Cluster_75 0.017 OrthoFinder output from all 47 species Compare
Pleocnemia irregularis HCCA Cluster_104 0.016 OrthoFinder output from all 47 species Compare
Psilotum nudum HCCA Cluster_41 0.017 OrthoFinder output from all 47 species Compare
Solanum lycopersicum HCCA Cluster_47 0.017 OrthoFinder output from all 47 species Compare
Solanum lycopersicum HCCA Cluster_74 0.029 OrthoFinder output from all 47 species Compare
Solanum lycopersicum HCCA Cluster_105 0.02 OrthoFinder output from all 47 species Compare
Stenochlaena palustris HCCA Cluster_56 0.017 OrthoFinder output from all 47 species Compare
Stenochlaena palustris HCCA Cluster_77 0.029 OrthoFinder output from all 47 species Compare
Vitis vinifera HCCA Cluster_30 0.016 OrthoFinder output from all 47 species Compare
Zea mays HCCA Cluster_74 0.015 OrthoFinder output from all 47 species Compare
Zea mays HCCA Cluster_170 0.023 OrthoFinder output from all 47 species Compare
Arabidopsis thaliana HCCA Cluster_24 0.019 OrthoFinder output from all 47 species Compare
Sequences (94) (download table)

InterPro Domains

GO Terms

Family Terms