Cpa|evm.model.tig00020629.39

Description : RNA processing.RNA quality control Exon Junction complex (EJC).peripheral components.SRm160 component

Gene families : OG0003504 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003504_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cpa\|evm.model.tig00020629.39

Target	Alias	Description	ECC score	Gene Family Method
Aob_g02107	No alias	component *(SRm160) of RNA quality control Exon Junction...	0.02	OrthoFinder output from all 47 species
Dac_g22461	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g46327	No alias	component *(SRm160) of RNA quality control Exon Junction...	0.01	OrthoFinder output from all 47 species
Msp_g21958	No alias	component *(SRm160) of RNA quality control Exon Junction...	0.02	OrthoFinder output from all 47 species
Msp_g32160	No alias	component *(SRm160) of RNA quality control Exon Junction...	0.02	OrthoFinder output from all 47 species
Pir_g33320	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Sacu_v1.1_s0250.g026743	No alias	component *(SRm160) of RNA quality control Exon Junction...	0.03	OrthoFinder output from all 47 species
Solyc09g030390.3.1	Solyc09g030390	component SRm160 of RNA quality control Exon Junction complex	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004518	nuclease activity	IEP	HCCA
MF	GO:0004540	ribonuclease activity	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0008033	tRNA processing	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002483	PWI_dom	48	117

External Links

No external refs found!