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  5. Cpa|evm.model.tig00020604.12

Cpa|evm.model.tig00020604.12


Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.Mpp10 assembly factor


Gene families : OG0005340 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005340_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00020604.12
Cluster HCCA: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00096p00039880 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
AT5G66540 No alias FUNCTIONS IN: molecular_function unknown; INVOLVED IN:... 0.05 OrthoFinder output from all 47 species
Cre08.g370601 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 OrthoFinder output from all 47 species
Dde_g16767 No alias SSU processome assembly factor *(MPP10) & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01007723001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
Gb_37982 No alias SSU processome assembly factor (MPP10) 0.02 OrthoFinder output from all 47 species
MA_77639g0010 No alias SSU processome assembly factor (MPP10) 0.02 OrthoFinder output from all 47 species
Mp8g00320.1 No alias SSU processome assembly factor (MPP10) 0.04 OrthoFinder output from all 47 species
Ore_g27798 No alias SSU processome assembly factor *(MPP10) & original... 0.02 OrthoFinder output from all 47 species
Solyc03g112820.4.1 Solyc03g112820 SSU processome assembly factor (MPP10) 0.05 OrthoFinder output from all 47 species
Zm00001e032203_P002 Zm00001e032203 SSU processome assembly factor (MPP10) 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEA Interproscan
BP GO:0006364 rRNA processing IEA Interproscan
CC GO:0034457 Mpp10 complex IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP HCCA
MF GO:0003883 CTP synthase activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006220 pyrimidine nucleotide metabolic process IEP HCCA
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP HCCA
BP GO:0006547 histidine metabolic process IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0030688 preribosome, small subunit precursor IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0072527 pyrimidine-containing compound metabolic process IEP HCCA
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR012173 Mpp10 36 635
No external refs found!