Cpa|evm.model.tig00020554.77 (MCM2, ATMCM2)

Aliases : MCM2, ATMCM2

Description : DNA replication licensing factor MCM2 OS=Arabidopsis thaliana

Gene families : OG0004206 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004206_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cpa\|evm.model.tig00020554.77
Cluster	HCCA: Cluster_19

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00016p00242770	MCM2, ATMCM2,...	Cell cycle.interphase.DNA replication.preinitiation.MCM...	0.05	OrthoFinder output from all 47 species
AT1G44900	MCM2, ATMCM2	minichromosome maintenance (MCM2/3/5) family protein	0.06	OrthoFinder output from all 47 species
Ala_g28049	MCM2, ATMCM2	component *(MCM2) of MCM replicative DNA helicase...	0.01	OrthoFinder output from all 47 species
Als_g05684	MCM2, ATMCM2	component *(MCM2) of MCM replicative DNA helicase...	0.04	OrthoFinder output from all 47 species
Als_g06371	MCM2, ATMCM2	component *(MCM2) of MCM replicative DNA helicase...	0.04	OrthoFinder output from all 47 species
Aop_g09602	MCM2, ATMCM2	component *(MCM2) of MCM replicative DNA helicase...	0.05	OrthoFinder output from all 47 species
Aspi01Gene05001.t1	MCM2, ATMCM2,...	component *(MCM2) of MCM replicative DNA helicase...	0.05	OrthoFinder output from all 47 species
Azfi_s0207.g057897	MCM2, ATMCM2	component *(MCM2) of MCM replicative DNA helicase...	0.05	OrthoFinder output from all 47 species
Ceric.10G002200.1	MCM2, ATMCM2,...	component *(MCM2) of MCM replicative DNA helicase...	0.09	OrthoFinder output from all 47 species
Cre07.g338000	MCM2, ATMCM2	Cell cycle.interphase.DNA replication.preinitiation.MCM...	0.1	OrthoFinder output from all 47 species
Dac_g07583	MCM2, ATMCM2	component *(MCM2) of MCM replicative DNA helicase...	0.04	OrthoFinder output from all 47 species
Dcu_g07094	MCM2, ATMCM2	component *(MCM2) of MCM replicative DNA helicase...	0.07	OrthoFinder output from all 47 species
Ehy_g18175	MCM2, ATMCM2	component *(MCM2) of MCM replicative DNA helicase...	0.02	OrthoFinder output from all 47 species
GSVIVT01001119001	MCM2, ATMCM2	Cell cycle.interphase.DNA replication.preinitiation.MCM...	0.06	OrthoFinder output from all 47 species
Gb_10893	MCM2, ATMCM2	component MCM2 of MCM replicative DNA helicase complex	0.06	OrthoFinder output from all 47 species
LOC_Os11g29380.1	MCM2, ATMCM2,...	component MCM2 of MCM replicative DNA helicase complex	0.07	OrthoFinder output from all 47 species
Len_g09187	MCM2, ATMCM2	component *(MCM2) of MCM replicative DNA helicase...	0.04	OrthoFinder output from all 47 species
Lfl_g39064	MCM2, ATMCM2	component *(MCM2) of MCM replicative DNA helicase...	0.03	OrthoFinder output from all 47 species
MA_10431703g0010	MCM2, ATMCM2	DNA replication licensing factor MCM2 OS=Oryza sativa...	0.09	OrthoFinder output from all 47 species
Mp3g00130.1	MCM2, ATMCM2	component MCM2 of MCM replicative DNA helicase complex	0.08	OrthoFinder output from all 47 species
Msp_g13902	MCM2, ATMCM2	component *(MCM2) of MCM replicative DNA helicase...	0.04	OrthoFinder output from all 47 species
Nbi_g03122	MCM2, ATMCM2	component *(MCM2) of MCM replicative DNA helicase...	0.06	OrthoFinder output from all 47 species
Ppi_g15758	MCM2, ATMCM2	component *(MCM2) of MCM replicative DNA helicase...	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0162.g023976	MCM2, ATMCM2	component *(MCM2) of MCM replicative DNA helicase...	0.04	OrthoFinder output from all 47 species
Sam_g04440	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g14284	No alias	component *(MCM2) of MCM replicative DNA helicase...	0.01	OrthoFinder output from all 47 species
Sam_g14285	No alias	component *(MCM2) of MCM replicative DNA helicase...	0.03	OrthoFinder output from all 47 species
Smo88537	MCM2, ATMCM2	Cell cycle.interphase.DNA replication.preinitiation.MCM...	0.03	OrthoFinder output from all 47 species
Solyc11g040120.3.1	MCM2, ATMCM2,...	component MCM2 of MCM replicative DNA helicase complex	0.07	OrthoFinder output from all 47 species
Spa_g05361	MCM2, ATMCM2	component *(MCM2) of MCM replicative DNA helicase...	0.04	OrthoFinder output from all 47 species
Tin_g44536	MCM2, ATMCM2	component *(MCM2) of MCM replicative DNA helicase...	0.04	OrthoFinder output from all 47 species
Zm00001e021446_P001	MCM2, ATMCM2,...	component MCM2 of MCM replicative DNA helicase complex	0.08	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006270	DNA replication initiation	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010639	negative regulation of organelle organization	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0032780	negative regulation of ATP-dependent activity	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033043	regulation of organelle organization	None	Extended
BP	GO:0033044	regulation of chromosome organization	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
CC	GO:0042555	MCM complex	IEA	Interproscan
BP	GO:0043086	negative regulation of catalytic activity	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043462	regulation of ATP-dependent activity	None	Extended
BP	GO:0044092	negative regulation of molecular function	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050790	regulation of catalytic activity	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051095	regulation of helicase activity	None	Extended
BP	GO:0051097	negative regulation of helicase activity	None	Extended
BP	GO:0051128	regulation of cellular component organization	None	Extended
BP	GO:0051129	negative regulation of cellular component organization	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065009	regulation of molecular function	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1905462	regulation of DNA duplex unwinding	None	Extended
BP	GO:1905463	negative regulation of DNA duplex unwinding	None	Extended
BP	GO:1905774	regulation of DNA helicase activity	None	Extended
BP	GO:1905775	negative regulation of DNA helicase activity	IEA	Interproscan
BP	GO:2001251	negative regulation of chromosome organization	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0001882	nucleoside binding	IEP	HCCA
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	HCCA
MF	GO:0003896	DNA primase activity	IEP	HCCA
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
MF	GO:0003909	DNA ligase activity	IEP	HCCA
MF	GO:0003910	DNA ligase (ATP) activity	IEP	HCCA
BP	GO:0006220	pyrimidine nucleotide metabolic process	IEP	HCCA
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006231	dTMP biosynthetic process	IEP	HCCA
BP	GO:0006260	DNA replication	IEP	HCCA
BP	GO:0006269	DNA replication, synthesis of RNA primer	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006298	mismatch repair	IEP	HCCA
BP	GO:0006310	DNA recombination	IEP	HCCA
BP	GO:0006950	response to stress	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
MF	GO:0008658	penicillin binding	IEP	HCCA
BP	GO:0009123	nucleoside monophosphate metabolic process	IEP	HCCA
BP	GO:0009124	nucleoside monophosphate biosynthetic process	IEP	HCCA
BP	GO:0009129	pyrimidine nucleoside monophosphate metabolic process	IEP	HCCA
BP	GO:0009130	pyrimidine nucleoside monophosphate biosynthetic process	IEP	HCCA
BP	GO:0009157	deoxyribonucleoside monophosphate biosynthetic process	IEP	HCCA
BP	GO:0009162	deoxyribonucleoside monophosphate metabolic process	IEP	HCCA
BP	GO:0009176	pyrimidine deoxyribonucleoside monophosphate metabolic process	IEP	HCCA
BP	GO:0009177	pyrimidine deoxyribonucleoside monophosphate biosynthetic process	IEP	HCCA
BP	GO:0009219	pyrimidine deoxyribonucleotide metabolic process	IEP	HCCA
BP	GO:0009221	pyrimidine deoxyribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009262	deoxyribonucleotide metabolic process	IEP	HCCA
BP	GO:0009263	deoxyribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009265	2'-deoxyribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009394	2'-deoxyribonucleotide metabolic process	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
MF	GO:0016886	ligase activity, forming phosphoric ester bonds	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
BP	GO:0019692	deoxyribose phosphate metabolic process	IEP	HCCA
MF	GO:0030983	mismatched DNA binding	IEP	HCCA
MF	GO:0031406	carboxylic acid binding	IEP	HCCA
MF	GO:0033218	amide binding	IEP	HCCA
MF	GO:0033293	monocarboxylic acid binding	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
MF	GO:0034061	DNA polymerase activity	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
MF	GO:0042083	5,10-methylenetetrahydrofolate-dependent methyltransferase activity	IEP	HCCA
MF	GO:0043177	organic acid binding	IEP	HCCA
BP	GO:0046073	dTMP metabolic process	IEP	HCCA
BP	GO:0046385	deoxyribose phosphate biosynthetic process	IEP	HCCA
MF	GO:0050660	flavin adenine dinucleotide binding	IEP	HCCA
MF	GO:0050797	thymidylate synthase (FAD) activity	IEP	HCCA
BP	GO:0050896	response to stimulus	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	HCCA
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	HCCA
MF	GO:1901681	sulfur compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR027925	MCM_N	162	235
IPR001208	MCM_dom	506	608
IPR001208	MCM_dom	433	478
IPR008045	MCM2	31	117
IPR033762	MCM_OB	250	393

External Links

No external refs found!

Cpa|evm.model.tig00020554.77 (MCM2, ATMCM2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation