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  5. Cpa|evm.model.tig00020553.48

Cpa|evm.model.tig00020553.48


Description : RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex.Sm-G component


Gene families : OG0006450 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006450_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00020553.48
Cluster HCCA: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00040p00092540 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.03 OrthoFinder output from all 47 species
AT2G23930 SNRNP-G probable small nuclear ribonucleoprotein G 0.03 OrthoFinder output from all 47 species
AT3G11500 No alias Small nuclear ribonucleoprotein family protein 0.05 OrthoFinder output from all 47 species
Aspi01Gene26079.t1 SNRNP-G, Aspi01Gene26079 component *(Sm-G) of U1/U2/U4/U5-associated Sm accessory... 0.03 OrthoFinder output from all 47 species
Aspi01Gene47494.t1 SNRNP-G, Aspi01Gene47494 component *(Sm-G) of U1/U2/U4/U5-associated Sm accessory... 0.02 OrthoFinder output from all 47 species
Cba_g71184 SNRNP-G component *(Sm-G) of U1/U2/U4/U5-associated Sm accessory... 0.01 OrthoFinder output from all 47 species
Ceric.34G000700.1 SNRNP-G, Ceric.34G000700 component *(Sm-G) of U1/U2/U4/U5-associated Sm accessory... 0.01 OrthoFinder output from all 47 species
Cre13.g566050 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.08 OrthoFinder output from all 47 species
LOC_Os03g29740.1 LOC_Os03g29740 component Sm-G of U1/U2/U4/U5-associated Sm accessory... 0.05 OrthoFinder output from all 47 species
LOC_Os07g41790.2 LOC_Os07g41790 component Sm-G of U1/U2/U4/U5-associated Sm accessory... 0.02 OrthoFinder output from all 47 species
MA_91807g0010 SNRNP-G component Sm-G of U1/U2/U4/U5-associated Sm accessory... 0.02 OrthoFinder output from all 47 species
Mp4g07410.1 No alias component Sm-G of U1/U2/U4/U5-associated Sm accessory... 0.03 OrthoFinder output from all 47 species
Ore_g32477 No alias component *(Sm-G) of U1/U2/U4/U5-associated Sm accessory... 0.01 OrthoFinder output from all 47 species
Pp3c5_21480V3.1 Pp3c5_21480 probable small nuclear ribonucleoprotein G 0.04 OrthoFinder output from all 47 species
Smo227744 SNRNP-G RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.03 OrthoFinder output from all 47 species
Tin_g12044 SNRNP-G component *(Sm-G) of U1/U2/U4/U5-associated Sm accessory... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0005048 signal sequence binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005786 signal recognition particle, endoplasmic reticulum targeting IEP HCCA
CC GO:0005875 microtubule associated complex IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006612 protein targeting to membrane IEP HCCA
BP GO:0006613 cotranslational protein targeting to membrane IEP HCCA
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008312 7S RNA binding IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
CC GO:0030286 dynein complex IEP HCCA
MF GO:0030942 endoplasmic reticulum signal peptide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
MF GO:0033218 amide binding IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
MF GO:0042277 peptide binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0045047 protein targeting to ER IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
CC GO:0048500 signal recognition particle IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0051668 localization within membrane IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0070972 protein localization to endoplasmic reticulum IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072657 protein localization to membrane IEP HCCA
BP GO:0090150 establishment of protein localization to membrane IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 9 71
No external refs found!