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Description : DNA damage response.BRCA1–BARD1 DNA-damage response heterodimer.BRCA1|BARD1 component
Gene families : OG0001776 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001776_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Cpa|evm.model.tig00020537.14 | |
| Cluster | HCCA: Cluster_19 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00067p00180030 | BRCA1, ATBRCA1,... | DNA damage response.BRCA1–BARD1 DNA-damage response... | 0.03 | OrthoFinder output from all 47 species | |
| AMTR_s00092p00067800 | BRCA1, ATBRCA1,... | DNA damage response.BRCA1–BARD1 DNA-damage response... | 0.03 | OrthoFinder output from all 47 species | |
| AT1G04020 | BARD1, ROW1, ATBARD1 | breast cancer associated RING 1 | 0.08 | OrthoFinder output from all 47 species | |
| AT4G21070 | BRCA1, ATBRCA1 | breast cancer susceptibility1 | 0.01 | OrthoFinder output from all 47 species | |
| Adi_g017491 | BRCA1, ATBRCA1 | component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... | 0.01 | OrthoFinder output from all 47 species | |
| Als_g16524 | BRCA1, ATBRCA1 | component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... | 0.04 | OrthoFinder output from all 47 species | |
| Aop_g08732 | BRCA1, ATBRCA1 | component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g10443 | BARD1, ROW1, ATBARD1 | component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... | 0.04 | OrthoFinder output from all 47 species | |
| Aspi01Gene06963.t1 | BRCA1, ATBRCA1,... | component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene40923.t1 | BARD1, ROW1,... | component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... | 0.01 | OrthoFinder output from all 47 species | |
| Ceric.06G016800.1 | BRCA1, ATBRCA1,... | component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... | 0.01 | OrthoFinder output from all 47 species | |
| Ceric.16G078600.1 | BARD1, ROW1,... | component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.19G066200.1 | BRCA1, ATBRCA1,... | component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.30G011100.1 | BARD1, ROW1,... | component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... | 0.02 | OrthoFinder output from all 47 species | |
| Cre07.g334650 | No alias | DNA damage response.BRCA1–BARD1 DNA-damage response... | 0.02 | OrthoFinder output from all 47 species | |
| Dac_g10577 | BRCA1, ATBRCA1 | component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... | 0.04 | OrthoFinder output from all 47 species | |
| Dac_g15330 | BRCA1, ATBRCA1 | component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g10242 | BRCA1, ATBRCA1 | component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_00493 | BRCA1, ATBRCA1 | component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage... | 0.06 | OrthoFinder output from all 47 species | |
| LOC_Os04g43300.1 | BARD1, ROW1,... | component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage... | 0.06 | OrthoFinder output from all 47 species | |
| LOC_Os05g40810.1 | BRCA1, ATBRCA1,... | component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage... | 0.01 | OrthoFinder output from all 47 species | |
| LOC_Os05g43610.1 | BRCA1, ATBRCA1,... | component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage... | 0.02 | OrthoFinder output from all 47 species | |
| Len_g03899 | BRCA1, ATBRCA1 | component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... | 0.01 | OrthoFinder output from all 47 species | |
| Len_g11293 | BARD1, ROW1, ATBARD1 | component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... | 0.02 | OrthoFinder output from all 47 species | |
| MA_12220g0020 | BRCA1, ATBRCA1 | component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage... | 0.08 | OrthoFinder output from all 47 species | |
| MA_187851g0010 | BRCA1, ATBRCA1 | Protein BREAST CANCER SUSCEPTIBILITY 1 homolog... | 0.05 | OrthoFinder output from all 47 species | |
| MA_66542g0010 | BRCA1, ATBRCA1 | Protein BREAST CANCER SUSCEPTIBILITY 1 homolog... | 0.04 | OrthoFinder output from all 47 species | |
| Mp1g00070.1 | BRCA1, ATBRCA1 | component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage... | 0.08 | OrthoFinder output from all 47 species | |
| Msp_g15829 | BARD1, ROW1, ATBARD1 | component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g12141 | BARD1, ROW1, ATBARD1 | component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g26771 | BRCA1, ATBRCA1 | component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... | 0.04 | OrthoFinder output from all 47 species | |
| Ppi_g16822 | BRCA1, ATBRCA1 | component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... | 0.02 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0019.g007705 | BRCA1, ATBRCA1 | component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0092.g018874 | BRCA1, ATBRCA1 | component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... | 0.04 | OrthoFinder output from all 47 species | |
| Smo414577 | BARD1, ROW1, ATBARD1 | Protein biosynthesis.translation... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc06g008210.4.1 | BARD1, ROW1,... | component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage... | 0.05 | OrthoFinder output from all 47 species | |
| Spa_g04261 | BARD1, ROW1, ATBARD1 | component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... | 0.07 | OrthoFinder output from all 47 species | |
| Tin_g32798 | BRCA1, ATBRCA1 | component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquiTination... | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e007590_P001 | BARD1, ROW1,... | component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage... | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e014997_P002 | BARD1, ROW1,... | component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage... | 0.01 | OrthoFinder output from all 47 species | |
| Zm00001e032102_P001 | BRCA1, ATBRCA1,... | component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage... | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0001882 | nucleoside binding | IEP | HCCA |
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003677 | DNA binding | IEP | HCCA |
| MF | GO:0003887 | DNA-directed DNA polymerase activity | IEP | HCCA |
| MF | GO:0003896 | DNA primase activity | IEP | HCCA |
| MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | HCCA |
| MF | GO:0003909 | DNA ligase activity | IEP | HCCA |
| MF | GO:0003910 | DNA ligase (ATP) activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| MF | GO:0005515 | protein binding | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006220 | pyrimidine nucleotide metabolic process | IEP | HCCA |
| BP | GO:0006221 | pyrimidine nucleotide biosynthetic process | IEP | HCCA |
| BP | GO:0006231 | dTMP biosynthetic process | IEP | HCCA |
| BP | GO:0006259 | DNA metabolic process | IEP | HCCA |
| BP | GO:0006269 | DNA replication, synthesis of RNA primer | IEP | HCCA |
| BP | GO:0006310 | DNA recombination | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| BP | GO:0009123 | nucleoside monophosphate metabolic process | IEP | HCCA |
| BP | GO:0009124 | nucleoside monophosphate biosynthetic process | IEP | HCCA |
| BP | GO:0009129 | pyrimidine nucleoside monophosphate metabolic process | IEP | HCCA |
| BP | GO:0009130 | pyrimidine nucleoside monophosphate biosynthetic process | IEP | HCCA |
| BP | GO:0009157 | deoxyribonucleoside monophosphate biosynthetic process | IEP | HCCA |
| BP | GO:0009162 | deoxyribonucleoside monophosphate metabolic process | IEP | HCCA |
| BP | GO:0009176 | pyrimidine deoxyribonucleoside monophosphate metabolic process | IEP | HCCA |
| BP | GO:0009177 | pyrimidine deoxyribonucleoside monophosphate biosynthetic process | IEP | HCCA |
| BP | GO:0009219 | pyrimidine deoxyribonucleotide metabolic process | IEP | HCCA |
| BP | GO:0009221 | pyrimidine deoxyribonucleotide biosynthetic process | IEP | HCCA |
| BP | GO:0009262 | deoxyribonucleotide metabolic process | IEP | HCCA |
| BP | GO:0009263 | deoxyribonucleotide biosynthetic process | IEP | HCCA |
| BP | GO:0009265 | 2'-deoxyribonucleotide biosynthetic process | IEP | HCCA |
| BP | GO:0009394 | 2'-deoxyribonucleotide metabolic process | IEP | HCCA |
| MF | GO:0016779 | nucleotidyltransferase activity | IEP | HCCA |
| MF | GO:0016886 | ligase activity, forming phosphoric ester bonds | IEP | HCCA |
| BP | GO:0018130 | heterocycle biosynthetic process | IEP | HCCA |
| BP | GO:0019438 | aromatic compound biosynthetic process | IEP | HCCA |
| BP | GO:0019692 | deoxyribose phosphate metabolic process | IEP | HCCA |
| MF | GO:0034061 | DNA polymerase activity | IEP | HCCA |
| MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | HCCA |
| MF | GO:0036094 | small molecule binding | IEP | HCCA |
| MF | GO:0042083 | 5,10-methylenetetrahydrofolate-dependent methyltransferase activity | IEP | HCCA |
| MF | GO:0043015 | gamma-tubulin binding | IEP | HCCA |
| BP | GO:0046073 | dTMP metabolic process | IEP | HCCA |
| BP | GO:0046385 | deoxyribose phosphate biosynthetic process | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| MF | GO:0050660 | flavin adenine dinucleotide binding | IEP | HCCA |
| MF | GO:0050797 | thymidylate synthase (FAD) activity | IEP | HCCA |
| BP | GO:0072527 | pyrimidine-containing compound metabolic process | IEP | HCCA |
| BP | GO:0072528 | pyrimidine-containing compound biosynthetic process | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| MF | GO:0097747 | RNA polymerase activity | IEP | HCCA |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | HCCA |
| MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
| BP | GO:1901137 | carbohydrate derivative biosynthetic process | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
| BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |