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  5. Cpa|evm.model.tig00001416.8

Cpa|evm.model.tig00001416.8 (HSP93-III, ATHSP93-III, ATCLPC)


Aliases : HSP93-III, ATHSP93-III, ATCLPC

Description : Chaperone protein ClpC2, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0000193 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000193_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00001416.8

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00110p00042430 CLPB3, CLPB-P,... External stimuli response.temperature.Hsp... 0.01 OrthoFinder output from all 47 species
AT5G50920 HSP93-V, DCA1,... CLPC homologue 1 0.02 OrthoFinder output from all 47 species
AT5G51070 SAG15, CLPD, ERD1 Clp ATPase 0.01 OrthoFinder output from all 47 species
Adi_g003407 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene26532.t1 CLPB3, CLPB-P,... organellar chaperone *(Clp-p/Clp-m) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.15G073100.1 HSP93-V, DCA1,... chaperone component *(ClpC) of chloroplast Clp-type... 0.02 OrthoFinder output from all 47 species
Ceric.30G013400.1 SAG15, CLPD,... chaperone component *(ClpD) of chloroplast Clp-type... 0.01 OrthoFinder output from all 47 species
Dcu_g03157 SAG15, CLPD, ERD1 chaperone component *(ClpD) of chloroplast Clp-type... 0.01 OrthoFinder output from all 47 species
LOC_Os11g16670.1 LOC_Os11g16670 no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Lfl_g02311 CLPB3, CLPB-P, APG6 organellar chaperone *(Clp-p/Clp-m) & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g03943 HSP93-V, DCA1,... chaperone component *(ClpC) of chloroplast Clp-type... 0.01 OrthoFinder output from all 47 species
Spa_g19032 HSP93-V, DCA1,... chaperone component *(ClpC) of chloroplast Clp-type... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
BP GO:0006289 nucleotide-excision repair IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 706 766
IPR004176 Clp_R_dom 168 217
IPR004176 Clp_R_dom 97 149
IPR003959 ATPase_AAA_core 278 409
No external refs found!