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  5. Cpa|evm.model.tig00001049.14

Cpa|evm.model.tig00001049.14 (AtTLP3, TLP3)


Aliases : AtTLP3, TLP3

Description : RNA biosynthesis.transcriptional activation.TUB transcription factor


Gene families : OG0000251 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000251_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00001049.14

Target Alias Description ECC score Gene Family Method Actions
AT2G47900 AtTLP3, TLP3 tubby like protein 3 0.01 OrthoFinder output from all 47 species
Adi_g056850 AtTLP3, TLP3 TUB-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Aob_g17127 AtTLP3, TLP3 TUB-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Aob_g17487 AtTLP3, TLP3 TUB-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Cre12.g520650 TLP2, AtTLP2 RNA biosynthesis.transcriptional activation.TUB... 0.02 OrthoFinder output from all 47 species
Dde_g24179 AtTLP3, TLP3 TUB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g04759 AtTLP3, TLP3 TUB-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Ehy_g09015 AtTLP3, TLP3 TUB-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Lfl_g07779 AtTLP3, TLP3 TUB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g07428 AtTLP3, TLP3 TUB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0037.g011898 AtTLP3, TLP3 TUB-type transcription factor & original description:... 0.01 OrthoFinder output from all 47 species
Sam_g25415 No alias TUB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Solyc02g062670.3.1 TLP2, AtTLP2,... transcription factor (TUB) 0.01 OrthoFinder output from all 47 species
Solyc04g071750.4.1 TLP2, AtTLP2,... transcription factor (TUB) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004190 aspartic-type endopeptidase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004659 prenyltransferase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
MF GO:0008318 protein prenyltransferase activity IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
BP GO:0018342 protein prenylation IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
MF GO:0070001 aspartic-type peptidase activity IEP HCCA
BP GO:0097354 prenylation IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR000007 Tubby_C 151 266
IPR000007 Tubby_C 287 331
No external refs found!