Cpa|evm.model.tig00000880.19 (STA1, EMB2770)

Aliases : STA1, EMB2770

Description : Protein STABILIZED1 OS=Arabidopsis thaliana

Gene families : OG0006034 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006034_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cpa\|evm.model.tig00000880.19

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00061p00165040	STA1, EMB2770,...	RNA processing.RNA splicing.U2-type-intron-specific...	0.02	OrthoFinder output from all 47 species
AT4G03430	STA1, EMB2770	pre-mRNA splicing factor-related	0.02	OrthoFinder output from all 47 species
Adi_g055878	STA1, EMB2770	component *(PRPF6) of U5 snRNP complex & original...	0.02	OrthoFinder output from all 47 species
Aspi01Gene55341.t1	STA1, EMB2770,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0035.g025646	STA1, EMB2770	component *(PRPF6) of U5 snRNP complex & original...	0.02	OrthoFinder output from all 47 species
Ceric.1Z128700.1	STA1, EMB2770,...	component *(PRPF6) of U5 snRNP complex & original...	0.02	OrthoFinder output from all 47 species
Cre14.g633650	STA1, EMB2770	RNA processing.RNA splicing.U2-type-intron-specific...	0.02	OrthoFinder output from all 47 species
Dcu_g14994	STA1, EMB2770	component *(PRPF6) of U5 snRNP complex & original...	0.03	OrthoFinder output from all 47 species
Gb_02940	STA1, EMB2770	protein factor PRPF6/PRP1/STA1 of U5 small nuclear...	0.01	OrthoFinder output from all 47 species
LOC_Os10g35550.1	STA1, EMB2770,...	protein factor PRPF6/PRP1/STA1 of U5 small nuclear...	0.02	OrthoFinder output from all 47 species
Mp6g10790.1	STA1, EMB2770	protein factor PRPF6/PRP1/STA1 of U5 small nuclear...	0.03	OrthoFinder output from all 47 species
Nbi_g11692	STA1, EMB2770	component *(PRPF6) of U5 snRNP complex & original...	0.02	OrthoFinder output from all 47 species
Ore_g19399	STA1, EMB2770	component *(PRPF6) of U5 snRNP complex & original...	0.01	OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002228	STA1, EMB2770	regulatory protein of poly(A) RNA polymerase activity &...	0.02	OrthoFinder output from all 47 species
Sam_g26501	No alias	component *(PRPF6) of U5 snRNP complex & original...	0.04	OrthoFinder output from all 47 species
Spa_g01165	STA1, EMB2770	component *(PRPF6) of U5 snRNP complex & original...	0.02	OrthoFinder output from all 47 species
Tin_g02882	STA1, EMB2770	component *(PRPF6) of U5 snRNP complex & original...	0.02	OrthoFinder output from all 47 species
Zm00001e018293_P001	STA1, EMB2770,...	protein factor PRPF6/PRP1/STA1 of U5 small nuclear...	0.01	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	None	Extended
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	None	Extended
BP	GO:0000398	mRNA splicing, via spliceosome	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	IEP	HCCA
MF	GO:0004252	serine-type endopeptidase activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
BP	GO:0006066	alcohol metabolic process	IEP	HCCA
BP	GO:0006720	isoprenoid metabolic process	IEP	HCCA
BP	GO:0016093	polyprenol metabolic process	IEP	HCCA
BP	GO:0019348	dolichol metabolic process	IEP	HCCA
CC	GO:0030176	obsolete integral component of endoplasmic reticulum membrane	IEP	HCCA
MF	GO:0030234	enzyme regulator activity	IEP	HCCA
BP	GO:0044255	cellular lipid metabolic process	IEP	HCCA
MF	GO:0098772	molecular function regulator activity	IEP	HCCA
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR010491	PRP1_N	18	49
IPR010491	PRP1_N	74	221

External Links

No external refs found!

Cpa|evm.model.tig00000880.19 (STA1, EMB2770)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation