Description : DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa subsp. japonica
Gene families : OG0004454 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004454_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Cpa|evm.model.tig00000792.35 | |
Cluster | HCCA: Cluster_13 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Als_g14510 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
Aspi01Gene71775.t1 | Aspi01Gene71775 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Azfi_s0021.g015637 | No alias | not classified & original description: CDS=1-2424 | 0.05 | OrthoFinder output from all 47 species | |
Ceric.09G038600.1 | Ceric.09G038600 | not classified & original description: pacid=50586912... | 0.02 | OrthoFinder output from all 47 species | |
Cre10.g420900 | No alias | DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... | 0.18 | OrthoFinder output from all 47 species | |
GSVIVT01009935001 | No alias | DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... | 0.12 | OrthoFinder output from all 47 species | |
Gb_16576 | No alias | DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... | 0.04 | OrthoFinder output from all 47 species | |
LOC_Os12g29660.1 | LOC_Os12g29660 | DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... | 0.08 | OrthoFinder output from all 47 species | |
MA_40229g0010 | No alias | DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... | 0.02 | OrthoFinder output from all 47 species | |
MA_956864g0010 | No alias | DEAD-box ATP-dependent RNA helicase 28 OS=Arabidopsis... | 0.01 | OrthoFinder output from all 47 species | |
Mp4g21330.1 | No alias | DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... | 0.14 | OrthoFinder output from all 47 species | |
Pir_g18860 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0058.g014925 | No alias | not classified & original description: CDS=1-2424 | 0.01 | OrthoFinder output from all 47 species | |
Sam_g13644 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Smo107914 | No alias | DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... | 0.02 | OrthoFinder output from all 47 species | |
Solyc04g081580.4.1 | Solyc04g081580 | DEAD-box ATP-dependent RNA helicase 28 OS=Arabidopsis... | 0.06 | OrthoFinder output from all 47 species | |
Zm00001e010143_P002 | Zm00001e010143 | DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... | 0.07 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
MF | GO:0005524 | ATP binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003677 | DNA binding | IEP | HCCA |
MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | HCCA |
MF | GO:0004809 | tRNA (guanine-N2-)-methyltransferase activity | IEP | HCCA |
CC | GO:0005575 | cellular_component | IEP | HCCA |
CC | GO:0005730 | nucleolus | IEP | HCCA |
BP | GO:0006351 | DNA-templated transcription | IEP | HCCA |
BP | GO:0008033 | tRNA processing | IEP | HCCA |
MF | GO:0008134 | transcription factor binding | IEP | HCCA |
MF | GO:0008168 | methyltransferase activity | IEP | HCCA |
MF | GO:0008170 | N-methyltransferase activity | IEP | HCCA |
MF | GO:0008173 | RNA methyltransferase activity | IEP | HCCA |
MF | GO:0008175 | tRNA methyltransferase activity | IEP | HCCA |
MF | GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity | IEP | HCCA |
BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
MF | GO:0016423 | tRNA (guanine) methyltransferase activity | IEP | HCCA |
MF | GO:0016740 | transferase activity | IEP | HCCA |
MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | HCCA |
BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | HCCA |
CC | GO:0030684 | preribosome | IEP | HCCA |
CC | GO:0032040 | small-subunit processome | IEP | HCCA |
MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | HCCA |
BP | GO:0034470 | ncRNA processing | IEP | HCCA |
BP | GO:0042254 | ribosome biogenesis | IEP | HCCA |
CC | GO:0043226 | organelle | IEP | HCCA |
CC | GO:0043228 | non-membrane-bounded organelle | IEP | HCCA |
CC | GO:0043229 | intracellular organelle | IEP | HCCA |
CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | HCCA |
BP | GO:0044085 | cellular component biogenesis | IEP | HCCA |
BP | GO:0097659 | nucleic acid-templated transcription | IEP | HCCA |
MF | GO:0097747 | RNA polymerase activity | IEP | HCCA |
MF | GO:0140098 | catalytic activity, acting on RNA | IEP | HCCA |
MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
CC | GO:1990904 | ribonucleoprotein complex | IEP | HCCA |
No external refs found! |