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  5. Cpa|evm.model.tig00000622.16

Cpa|evm.model.tig00000622.16 (NPL1, PHOT2)


Aliases : NPL1, PHOT2

Description : Phototropin-2 OS=Oryza sativa subsp. japonica


Gene families : OG0001978 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001978_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000622.16
Cluster HCCA: Cluster_21

Target Alias Description ECC score Gene Family Method Actions
AT5G58140 NPL1, PHOT2 phototropin 2 0.02 OrthoFinder output from all 47 species
LOC_Os11g01140.1 RPT1, PHOT1,... protein kinase (AGC-VIII). phototropin light receptor.... 0.02 OrthoFinder output from all 47 species
LOC_Os12g01140.1 RPT1, PHOT1,... protein kinase (AGC-VIII). phototropin light receptor.... 0.01 OrthoFinder output from all 47 species
Solyc01g097770.4.1 NPL1, PHOT2,... protein kinase (AGC-VIII). phototropin light receptor.... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005506 iron ion binding IEP HCCA
BP GO:0006766 vitamin metabolic process IEP HCCA
BP GO:0006767 water-soluble vitamin metabolic process IEP HCCA
BP GO:0008616 queuosine biosynthetic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009116 nucleoside metabolic process IEP HCCA
BP GO:0009119 ribonucleoside metabolic process IEP HCCA
BP GO:0009163 nucleoside biosynthetic process IEP HCCA
BP GO:0009235 cobalamin metabolic process IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0020037 heme binding IEP HCCA
BP GO:0030163 protein catabolic process IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0034404 nucleobase-containing small molecule biosynthetic process IEP HCCA
BP GO:0042455 ribonucleoside biosynthetic process IEP HCCA
BP GO:0043094 cellular metabolic compound salvage IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043174 nucleoside salvage IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046116 queuosine metabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
BP GO:1901657 glycosyl compound metabolic process IEP HCCA
BP GO:1901659 glycosyl compound biosynthetic process IEP HCCA
BP GO:1990397 queuosine salvage IEP HCCA
InterPro domains Description Start Stop
IPR011598 bHLH_dom 40 69
IPR000014 PAS 422 489
IPR000014 PAS 217 300
No external refs found!