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  5. Cpa|evm.model.tig00000571.5

Cpa|evm.model.tig00000571.5


Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.UTP2/NOP14 assembly factor


Gene families : OG0006351 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006351_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000571.5
Cluster HCCA: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00047p00175730 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
AT1G69070 No alias FUNCTIONS IN: molecular_function unknown; INVOLVED IN:... 0.09 OrthoFinder output from all 47 species
Aev_g04842 No alias SSU processome assembly factor *(UTP2/NOP14) & original... 0.02 OrthoFinder output from all 47 species
Als_g61014 No alias SSU processome assembly factor *(UTP2/NOP14) & original... 0.03 OrthoFinder output from all 47 species
Aop_g09330 No alias SSU processome assembly factor *(UTP2/NOP14) & original... 0.06 OrthoFinder output from all 47 species
Aspi01Gene39085.t1 Aspi01Gene39085 SSU processome assembly factor *(UTP2/NOP14) & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0038.g026288 No alias SSU processome assembly factor *(UTP2/NOP14) & original... 0.04 OrthoFinder output from all 47 species
Cba_g38222 No alias SSU processome assembly factor *(UTP2/NOP14) & original... 0.02 OrthoFinder output from all 47 species
Ceric.29G019800.1 Ceric.29G019800 SSU processome assembly factor *(UTP2/NOP14) & original... 0.04 OrthoFinder output from all 47 species
Cre06.g260850 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.11 OrthoFinder output from all 47 species
Dcu_g03088 No alias SSU processome assembly factor *(UTP2/NOP14) & original... 0.03 OrthoFinder output from all 47 species
Ehy_g08623 No alias SSU processome assembly factor *(UTP2/NOP14) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01012255001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 OrthoFinder output from all 47 species
Gb_34026 No alias SSU processome assembly factor (UTP2/NOP14) 0.01 OrthoFinder output from all 47 species
LOC_Os03g40110.1 LOC_Os03g40110 SSU processome assembly factor (UTP2/NOP14) 0.06 OrthoFinder output from all 47 species
Lfl_g35370 No alias SSU processome assembly factor *(UTP2/NOP14) & original... 0.03 OrthoFinder output from all 47 species
Mp8g07460.1 No alias SSU processome assembly factor (UTP2/NOP14) 0.08 OrthoFinder output from all 47 species
Sam_g35268 No alias SSU processome assembly factor *(UTP2/NOP14) & original... 0.03 OrthoFinder output from all 47 species
Solyc05g011990.4.1 Solyc05g011990 SSU processome assembly factor (UTP2/NOP14) 0.07 OrthoFinder output from all 47 species
Zm00001e004967_P001 Zm00001e004967 SSU processome assembly factor (UTP2/NOP14) 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0032040 small-subunit processome IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008175 tRNA methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
MF GO:0043168 anion binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR007276 Nop14 35 350
IPR007276 Nop14 387 757
IPR007276 Nop14 758 879
No external refs found!