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  5. Cpa|evm.model.tig00000525.10

Cpa|evm.model.tig00000525.10 (emb1354, CDC48C)


Aliases : emb1354, CDC48C

Description : Cell division control protein 48 homolog C OS=Arabidopsis thaliana


Gene families : OG0000324 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000324_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000525.10

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00040p00198390 CIP111,... Calmodulin-interacting protein 111 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
AMTR_s00072p00117380 evm_27.TU.AmTr_v1... Cell division control protein 48 homolog D... 0.02 OrthoFinder output from all 47 species
AMTR_s00085p00052820 CDC48A, CDC48,... Cell division cycle protein 48 homolog OS=Glycine max 0.01 OrthoFinder output from all 47 species
AMTR_s00095p00091200 CIP111,... Calmodulin-interacting protein 111 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
AT2G03670 CDC48B cell division cycle 48B 0.02 OrthoFinder output from all 47 species
AT3G01610 emb1354, CDC48C cell division cycle 48C 0.02 OrthoFinder output from all 47 species
AT3G56690 CIP111 Cam interacting protein 111 0.01 OrthoFinder output from all 47 species
Adi_g080379 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ala_g09138 CIP111 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g20264 No alias platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g02580 CDC48B platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene45727.t1 CIP111, Aspi01Gene45727 platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Cre09.g398550 emb1354, CDC48C Cell division control protein 48 homolog C... 0.02 OrthoFinder output from all 47 species
Dcu_g04096 CIP111 platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01025783001 CIP111 Calmodulin-interacting protein 111 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
LOC_Os06g01980.1 emb1354, CDC48C,... Cell division control protein 48 homolog C... 0.02 OrthoFinder output from all 47 species
LOC_Os11g11340.1 CIP111, LOC_Os11g11340 Calmodulin-interacting protein 111 OS=Arabidopsis... 0.01 OrthoFinder output from all 47 species
Mp2g12350.1 emb1354, CDC48C Calmodulin-interacting protein 111 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Mp2g13350.1 CIP111 Calmodulin-interacting protein 111 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Msp_g31553 CDC48B platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g19173 emb1354, CDC48C platform ATPase CDC48 & original description: none 0.01 OrthoFinder output from all 47 species
Pnu_g13016 CIP111 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Smo173081 CDC48B Cell division control protein 48 homolog B... 0.02 OrthoFinder output from all 47 species
Solyc05g012190.3.1 CDC48B, Solyc05g012190 Cell division control protein 48 homolog B... 0.01 OrthoFinder output from all 47 species
Solyc10g078320.2.1 CIP111, Solyc10g078320 Calmodulin-interacting protein 111 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e000416_P002 Zm00001e000416 platform ATPase (CDC48) 0.02 OrthoFinder output from all 47 species
Zm00001e021405_P001 CIP111, Zm00001e021405 Calmodulin-interacting protein 111 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Zm00001e036688_P001 emb1354, CDC48C,... Cell division control protein 48 homolog C... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR031996 NVL2_nucleolin-bd 29 91
IPR003959 ATPase_AAA_core 583 704
IPR003959 ATPase_AAA_core 248 389
No external refs found!