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  5. Cpa|evm.model.tig00000507.33

Cpa|evm.model.tig00000507.33 (DEF2, ATDEF2, PDF1B)


Aliases : DEF2, ATDEF2, PDF1B

Description : Protein biosynthesis.organelle translation machineries.peptide deformylation.PDF formylmethionine deformylase


Gene families : OG0005303 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005303_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000507.33
Cluster HCCA: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
AT5G14660 DEF2, ATDEF2, PDF1B peptide deformylase 1B 0.02 OrthoFinder output from all 47 species
Aop_g27427 DEF2, ATDEF2, PDF1B EC_3.5 hydrolase acting on carbon-nitrogen bond, other... 0.02 OrthoFinder output from all 47 species
Azfi_s0003.g007727 DEF2, ATDEF2, PDF1B EC_3.5 hydrolase acting on carbon-nitrogen bond, other... 0.02 OrthoFinder output from all 47 species
Cba_g09544 DEF2, ATDEF2, PDF1B EC_3.5 hydrolase acting on carbon-nitrogen bond, other... 0.02 OrthoFinder output from all 47 species
Ceric.21G047700.1 DEF2, ATDEF2,... EC_3.5 hydrolase acting on carbon-nitrogen bond, other... 0.04 OrthoFinder output from all 47 species
Dde_g07189 DEF2, ATDEF2, PDF1B EC_3.5 hydrolase acting on carbon-nitrogen bond, other... 0.03 OrthoFinder output from all 47 species
GSVIVT01032450001 DEF2, ATDEF2, PDF1B Protein biosynthesis.organelle translation... 0.02 OrthoFinder output from all 47 species
Spa_g00688 DEF2, ATDEF2, PDF1B EC_3.5 hydrolase acting on carbon-nitrogen bond, other... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003747 translation release factor activity IEP HCCA
BP GO:0006415 translational termination IEP HCCA
MF GO:0008079 translation termination factor activity IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP HCCA
MF GO:0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor IEP HCCA
MF GO:0016972 thiol oxidase activity IEP HCCA
BP GO:0022411 cellular component disassembly IEP HCCA
BP GO:0032984 protein-containing complex disassembly IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
InterPro domains Description Start Stop
IPR023635 Peptide_deformylase 63 205
No external refs found!