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  5. Cpa|evm.model.tig00000383.51

Cpa|evm.model.tig00000383.51 (ATGCN1, GCN1)


Aliases : ATGCN1, GCN1

Description : ABC transporter F family member 1 OS=Arabidopsis thaliana


Gene families : OG0003164 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003164_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000383.51
Cluster HCCA: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
AT5G60790 ATGCN1, GCN1 ABC transporter family protein 0.01 OrthoFinder output from all 47 species
Ceric.12G026600.1 ATGCN1, GCN1,... not classified & original description: pacid=50600930... 0.02 OrthoFinder output from all 47 species
Cre01.g023787 ATGCN1, GCN1 ABC transporter F family member 1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Nbi_g04312 ATGCN1, GCN1 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g01962 ATGCN1, GCN1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g31878 ATGCN1, GCN1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c1_33790V3.1 ATGCN1, GCN1, Pp3c1_33790 ABC transporter family protein 0.01 OrthoFinder output from all 47 species
Ppi_g18687 ATGCN1, GCN1 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Zm00001e017809_P001 ATGCN1, GCN1,... ABC transporter F family member 1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016887 ATP hydrolysis activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like_ATP-bd 70 231
IPR003439 ABC_transporter-like_ATP-bd 389 516
IPR032781 ABC_tran_Xtn 272 351
No external refs found!