1. Home
  2. Species
  3. Cyanophora paradoxa
  4. Sequence
  5. Cpa|evm.model.tig00000237.42

Cpa|evm.model.tig00000237.42 (ICU2)


Aliases : ICU2

Description : Cell cycle.interphase.DNA replication.elongation.DNA polymerase alpha complex.POLA1 catalytic component


Gene families : OG0005633 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005633_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000237.42
Cluster HCCA: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00017p00221560 ICU2,... RNA biosynthesis.transcriptional activation.GRF-GIF... 0.04 OrthoFinder output from all 47 species
AT5G67100 ICU2 DNA-directed DNA polymerases 0.06 OrthoFinder output from all 47 species
Adi_g018487 ICU2 catalytic component *(POLA1) of DNA polymerase alpha... 0.02 OrthoFinder output from all 47 species
Als_g33916 ICU2 catalytic component *(POLA1) of DNA polymerase alpha... 0.02 OrthoFinder output from all 47 species
Aop_g08265 ICU2 catalytic component *(POLA1) of DNA polymerase alpha... 0.01 OrthoFinder output from all 47 species
Aspi01Gene70874.t1 ICU2, Aspi01Gene70874 catalytic component *(POLA1) of DNA polymerase alpha... 0.03 OrthoFinder output from all 47 species
Azfi_s0226.g059002 ICU2 catalytic component *(POLA1) of DNA polymerase alpha... 0.04 OrthoFinder output from all 47 species
Ceric.09G047200.1 ICU2, Ceric.09G047200 catalytic component *(POLA1) of DNA polymerase alpha... 0.07 OrthoFinder output from all 47 species
Cre04.g214350 ICU2 Cell cycle.interphase.DNA replication.elongation.DNA... 0.08 OrthoFinder output from all 47 species
Dac_g30890 ICU2 catalytic component *(POLA1) of DNA polymerase alpha... 0.02 OrthoFinder output from all 47 species
Dcu_g12848 ICU2 catalytic component *(POLA1) of DNA polymerase alpha... 0.06 OrthoFinder output from all 47 species
GSVIVT01022113001 ICU2 Cell cycle.interphase.DNA replication.elongation.DNA... 0.05 OrthoFinder output from all 47 species
Gb_26053 ICU2 catalytic component POLA1 of DNA polymerase alpha complex 0.06 OrthoFinder output from all 47 species
Gb_26055 ICU2 DNA polymerase alpha catalytic subunit OS=Oryza sativa... 0.05 OrthoFinder output from all 47 species
LOC_Os01g64820.1 ICU2, LOC_Os01g64820 catalytic component POLA1 of DNA polymerase alpha complex 0.06 OrthoFinder output from all 47 species
Len_g55945 ICU2 catalytic component *(POLA1) of DNA polymerase alpha... 0.04 OrthoFinder output from all 47 species
MA_10427959g0010 ICU2 DNA polymerase alpha catalytic subunit OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
MA_242082g0010 ICU2 catalytic component POLA1 of DNA polymerase alpha complex 0.07 OrthoFinder output from all 47 species
MA_3471g0020 ICU2 DNA polymerase alpha catalytic subunit OS=Oryza sativa... 0.06 OrthoFinder output from all 47 species
Mp7g03960.1 ICU2 catalytic component POLA1 of DNA polymerase alpha complex 0.08 OrthoFinder output from all 47 species
Msp_g14735 ICU2 catalytic component *(POLA1) of DNA polymerase alpha... 0.03 OrthoFinder output from all 47 species
Nbi_g01498 ICU2 catalytic component *(POLA1) of DNA polymerase alpha... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0079.g017804 ICU2 catalytic component *(POLA1) of DNA polymerase alpha... 0.02 OrthoFinder output from all 47 species
Sam_g08423 No alias catalytic component *(POLA1) of DNA polymerase alpha... 0.05 OrthoFinder output from all 47 species
Smo232193 ICU2 Cell cycle.interphase.DNA replication.elongation.DNA... 0.03 OrthoFinder output from all 47 species
Smo422725 ICU2 Cell cycle.interphase.DNA replication.elongation.DNA... 0.02 OrthoFinder output from all 47 species
Solyc02g093300.3.1 ICU2, Solyc02g093300 catalytic component POLA1 of DNA polymerase alpha complex 0.05 OrthoFinder output from all 47 species
Spa_g09409 ICU2 catalytic component *(POLA1) of DNA polymerase alpha... 0.03 OrthoFinder output from all 47 species
Tin_g01298 ICU2 catalytic component *(POLA1) of DNA polymerase alpha... 0.02 OrthoFinder output from all 47 species
Zm00001e019156_P001 ICU2, Zm00001e019156 catalytic component POLA1 of DNA polymerase alpha complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEA Interproscan
MF GO:0003887 DNA-directed DNA polymerase activity IEA Interproscan
BP GO:0006260 DNA replication IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003909 DNA ligase activity IEP HCCA
MF GO:0003910 DNA ligase (ATP) activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006220 pyrimidine nucleotide metabolic process IEP HCCA
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP HCCA
BP GO:0006231 dTMP biosynthetic process IEP HCCA
BP GO:0006270 DNA replication initiation IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0009123 nucleoside monophosphate metabolic process IEP HCCA
BP GO:0009124 nucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009129 pyrimidine nucleoside monophosphate metabolic process IEP HCCA
BP GO:0009130 pyrimidine nucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009157 deoxyribonucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009162 deoxyribonucleoside monophosphate metabolic process IEP HCCA
BP GO:0009176 pyrimidine deoxyribonucleoside monophosphate metabolic process IEP HCCA
BP GO:0009177 pyrimidine deoxyribonucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009219 pyrimidine deoxyribonucleotide metabolic process IEP HCCA
BP GO:0009221 pyrimidine deoxyribonucleotide biosynthetic process IEP HCCA
BP GO:0009262 deoxyribonucleotide metabolic process IEP HCCA
BP GO:0009263 deoxyribonucleotide biosynthetic process IEP HCCA
BP GO:0009265 2'-deoxyribonucleotide biosynthetic process IEP HCCA
BP GO:0009394 2'-deoxyribonucleotide metabolic process IEP HCCA
BP GO:0010639 negative regulation of organelle organization IEP HCCA
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019692 deoxyribose phosphate metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0032780 negative regulation of ATP-dependent activity IEP HCCA
BP GO:0033043 regulation of organelle organization IEP HCCA
BP GO:0033044 regulation of chromosome organization IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0042083 5,10-methylenetetrahydrofolate-dependent methyltransferase activity IEP HCCA
CC GO:0042555 MCM complex IEP HCCA
BP GO:0043086 negative regulation of catalytic activity IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043462 regulation of ATP-dependent activity IEP HCCA
BP GO:0044092 negative regulation of molecular function IEP HCCA
BP GO:0046073 dTMP metabolic process IEP HCCA
BP GO:0046385 deoxyribose phosphate biosynthetic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0048523 negative regulation of cellular process IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
BP GO:0050790 regulation of catalytic activity IEP HCCA
MF GO:0050797 thymidylate synthase (FAD) activity IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051095 regulation of helicase activity IEP HCCA
BP GO:0051097 negative regulation of helicase activity IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
BP GO:0051129 negative regulation of cellular component organization IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0065009 regulation of molecular function IEP HCCA
BP GO:0072527 pyrimidine-containing compound metabolic process IEP HCCA
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1905462 regulation of DNA duplex unwinding IEP HCCA
BP GO:1905463 negative regulation of DNA duplex unwinding IEP HCCA
BP GO:1905774 regulation of DNA helicase activity IEP HCCA
BP GO:1905775 negative regulation of DNA helicase activity IEP HCCA
BP GO:2001251 negative regulation of chromosome organization IEP HCCA
InterPro domains Description Start Stop
IPR024647 DNA_pol_a_cat_su_N 21 79
IPR006134 DNA-dir_DNA_pol_B_multi_dom 989 1299
IPR006133 DNA-dir_DNA_pol_B_exonuc 435 786
IPR015088 Znf_DNA-dir_DNA_pol_B_alpha 1438 1512
No external refs found!