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  5. Cpa|evm.model.tig00000217.33

Cpa|evm.model.tig00000217.33


Description : Vesicle trafficking.clathrin coated vesicle (CCV) machinery.AP-1 trans-Golgi network cargo adaptor complex.AP1G large gamma subunit


Gene families : OG0002603 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002603_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000217.33

Target Alias Description ECC score Gene Family Method Actions
AT1G60070 No alias Adaptor protein complex AP-1, gamma subunit 0.04 OrthoFinder output from all 47 species
Adi_g008187 No alias large subunit gamma of AP-1 trans-Golgi network cargo... 0.02 OrthoFinder output from all 47 species
Aev_g07309 GAMMA-ADAPTIN 1,... large subunit gamma of AP-1 trans-Golgi network cargo... 0.02 OrthoFinder output from all 47 species
Ala_g14098 No alias large subunit gamma of AP-1 trans-Golgi network cargo... 0.02 OrthoFinder output from all 47 species
Als_g14323 No alias large subunit gamma of AP-1 trans-Golgi network cargo... 0.01 OrthoFinder output from all 47 species
Aop_g01386 GAMMA-ADAPTIN 1,... large subunit gamma of AP-1 trans-Golgi network cargo... 0.02 OrthoFinder output from all 47 species
Aspi01Gene50294.t1 GAMMA-ADAPTIN 1,... large subunit gamma of AP-1 trans-Golgi network cargo... 0.01 OrthoFinder output from all 47 species
Aspi01Gene50408.t1 GAMMA-ADAPTIN 1,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene62790.t1 Aspi01Gene62790 large subunit gamma of AP-1 trans-Golgi network cargo... 0.01 OrthoFinder output from all 47 species
Cba_g15244 GAMMA-ADAPTIN 1,... large subunit gamma of AP-1 trans-Golgi network cargo... 0.03 OrthoFinder output from all 47 species
Ceric.14G035400.1 GAMMA-ADAPTIN 1,... large subunit gamma of AP-1 trans-Golgi network cargo... 0.02 OrthoFinder output from all 47 species
Ceric.1Z105200.1 Ceric.1Z105200 large subunit gamma of AP-1 trans-Golgi network cargo... 0.02 OrthoFinder output from all 47 species
Ceric.37G015500.1 GAMMA-ADAPTIN 1,... not classified & original description: pacid=50616075... 0.02 OrthoFinder output from all 47 species
Cre16.g676650 GAMMA-ADAPTIN 1,... Vesicle trafficking.clathrin coated vesicle (CCV)... 0.07 OrthoFinder output from all 47 species
Dcu_g01942 No alias large subunit gamma of AP-1 trans-Golgi network cargo... 0.03 OrthoFinder output from all 47 species
Dde_g23696 GAMMA-ADAPTIN 1,... large subunit gamma of AP-1 trans-Golgi network cargo... 0.02 OrthoFinder output from all 47 species
Ehy_g08600 GAMMA-ADAPTIN 1,... large subunit gamma of AP-1 trans-Golgi network cargo... 0.01 OrthoFinder output from all 47 species
GSVIVT01020209001 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.05 OrthoFinder output from all 47 species
Gb_02741 No alias large subunit gamma of AP-1 trans-Golgi network cargo... 0.05 OrthoFinder output from all 47 species
LOC_Os02g56110.1 LOC_Os02g56110 large subunit gamma of AP-1 trans-Golgi network cargo... 0.02 OrthoFinder output from all 47 species
LOC_Os06g07090.1 GAMMA-ADAPTIN 1,... large subunit gamma of AP-1 trans-Golgi network cargo... 0.03 OrthoFinder output from all 47 species
Len_g40020 No alias large subunit gamma of AP-1 trans-Golgi network cargo... 0.02 OrthoFinder output from all 47 species
MA_675g0010 No alias AP-1 complex subunit gamma-2 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Mp2g02140.1 GAMMA-ADAPTIN 1,... large subunit gamma of AP-1 trans-Golgi network cargo... 0.04 OrthoFinder output from all 47 species
Msp_g09172 No alias large subunit gamma of AP-1 trans-Golgi network cargo... 0.03 OrthoFinder output from all 47 species
Nbi_g04417 GAMMA-ADAPTIN 1,... large subunit gamma of AP-1 trans-Golgi network cargo... 0.05 OrthoFinder output from all 47 species
Ore_g15695 GAMMA-ADAPTIN 1,... large subunit gamma of AP-1 trans-Golgi network cargo... 0.02 OrthoFinder output from all 47 species
Pnu_g06469 No alias large subunit gamma of AP-1 trans-Golgi network cargo... 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0105.g020158 No alias large subunit gamma of AP-1 trans-Golgi network cargo... 0.01 OrthoFinder output from all 47 species
Smo168054 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.01 OrthoFinder output from all 47 species
Solyc04g025870.4.1 Solyc04g025870 large subunit gamma of AP-1 trans-Golgi network cargo... 0.03 OrthoFinder output from all 47 species
Solyc05g005780.3.1 Solyc05g005780 large subunit gamma of AP-1 trans-Golgi network cargo... 0.04 OrthoFinder output from all 47 species
Spa_g55808 No alias large subunit gamma of AP-1 trans-Golgi network cargo... 0.03 OrthoFinder output from all 47 species
Tin_g02865 GAMMA-ADAPTIN 1,... large subunit gamma of AP-1 trans-Golgi network cargo... 0.02 OrthoFinder output from all 47 species
Zm00001e023661_P002 GAMMA-ADAPTIN 1,... large subunit gamma of AP-1 trans-Golgi network cargo... 0.04 OrthoFinder output from all 47 species
Zm00001e030101_P002 Zm00001e030101 large subunit gamma of AP-1 trans-Golgi network cargo... 0.05 OrthoFinder output from all 47 species
Zm00001e036396_P001 Zm00001e036396 large subunit gamma of AP-1 trans-Golgi network cargo... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
CC GO:0030117 membrane coat IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004190 aspartic-type endopeptidase activity IEP HCCA
MF GO:0004357 glutamate-cysteine ligase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005096 GTPase activator activity IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006575 cellular modified amino acid metabolic process IEP HCCA
BP GO:0006749 glutathione metabolic process IEP HCCA
BP GO:0006750 glutathione biosynthetic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
MF GO:0008047 enzyme activator activity IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009966 regulation of signal transduction IEP HCCA
BP GO:0010646 regulation of cell communication IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016881 acid-amino acid ligase activity IEP HCCA
BP GO:0019184 nonribosomal peptide biosynthetic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0023051 regulation of signaling IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030126 COPI vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
BP GO:0032012 regulation of ARF protein signal transduction IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
MF GO:0034450 ubiquitin-ubiquitin ligase activity IEP HCCA
BP GO:0042398 cellular modified amino acid biosynthetic process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044272 sulfur compound biosynthetic process IEP HCCA
BP GO:0046578 regulation of Ras protein signal transduction IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
MF GO:0070001 aspartic-type peptidase activity IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
BP GO:1902531 regulation of intracellular signal transduction IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR002553 Clathrin/coatomer_adapt-like_N 77 504
No external refs found!