Cpa|evm.model.tig00000197.16 (SK20, ASK20)


Aliases : SK20, ASK20

Description : Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.Cullin-based ubiquitylation complexes.SKP1-CUL1-FBX (SCF) E3 ligase complexes.SKP1/ASK1 target protein binding component


Gene families : OG0005505 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005505_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000197.16
Cluster HCCA: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
AT3G61415 SK21, ASK21 SKP1-like 21 0.01 OrthoFinder output from all 47 species
Aop_g20096 SK21, ASK21 ASK-type linker component of SCF E3 ubiquitin ligase... 0.01 OrthoFinder output from all 47 species
Ceric.06G090100.1 SK21, ASK21,... ASK-type linker component of SCF E3 ubiquitin ligase... 0.01 OrthoFinder output from all 47 species
Ehy_g02294 SK21, ASK21 ASK-type linker component of SCF E3 ubiquitin ligase... 0.01 OrthoFinder output from all 47 species
MA_72198g0010 SK21, ASK21 target protein binding component SKP1/ASK1 of... 0.01 OrthoFinder output from all 47 species
Zm00001e021584_P008 SK21, ASK21,... target protein binding component SKP1/ASK1 of... 0.02 OrthoFinder output from all 47 species
Zm00001e040021_P001 SK21, ASK21,... target protein binding component SKP1/ASK1 of... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006511 ubiquitin-dependent protein catabolic process IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0008612 peptidyl-lysine modification to peptidyl-hypusine IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
CC GO:0046540 U4/U6 x U5 tri-snRNP complex IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
MF GO:0050662 obsolete coenzyme binding IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0097526 spliceosomal tri-snRNP complex IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR016073 Skp1_comp_POZ 35 91
IPR016072 Skp1_comp_dimer 129 165
No external refs found!