Cpa|evm.model.tig00000144.188 (CHR01, CHR1, CHA1,...)


Aliases : CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1, DDM1

Description : ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana


Gene families : OG0000102 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000102_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000144.188
Cluster HCCA: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00059p00063470 CHR01, CHR1,... Chromatin organisation.DNA methylation.RNA-independent... 0.02 OrthoFinder output from all 47 species
AMTR_s00086p00165640 PKL, GYM, CHR6,... Chromatin organisation.chromatin remodeling... 0.01 OrthoFinder output from all 47 species
AT5G18620 CHR17 chromatin remodeling factor17 0.03 OrthoFinder output from all 47 species
AT5G19310 No alias Homeotic gene regulator 0.03 OrthoFinder output from all 47 species
AT5G66750 CHR01, CHR1,... chromatin remodeling 1 0.02 OrthoFinder output from all 47 species
Ala_g22712 CHR11 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Als_g01913 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g06161 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g08885 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene52538.t1 PKL, GYM, CHR6,... not classified & original description: none 0.01 OrthoFinder output from all 47 species
Azfi_s0003.g007848 CHR01, CHR1,... not classified & original description: CDS=1-2349 0.03 OrthoFinder output from all 47 species
Ceric.02G040400.1 CHR5, Ceric.02G040400 not classified & original description: pacid=50584074... 0.05 OrthoFinder output from all 47 species
Cre03.g158550 PKL, GYM, CHR6,... CHD3-type chromatin-remodeling factor PICKLE... 0.06 OrthoFinder output from all 47 species
Cre14.g610300 No alias No description available 0.01 OrthoFinder output from all 47 species
Dac_g05131 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g07364 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g05806 CHR11 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g15911 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g42061 CHR5 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g03342 ATCHR12 not classified & original description: none 0.01 OrthoFinder output from all 47 species
GSVIVT01012117001 PKR1, CHR4 RNA biosynthesis.transcriptional activation.PHD finger... 0.02 OrthoFinder output from all 47 species
GSVIVT01017791001 CHR17 Chromatin organisation.chromatin remodeling... 0.01 OrthoFinder output from all 47 species
GSVIVT01018979001 CHR01, CHR1,... ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_16888 CHR01, CHR1,... ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Gb_18673 PKL, GYM, CHR6,... chromatin remodeling factor (Chd3/Mi-2) 0.01 OrthoFinder output from all 47 species
LOC_Os03g51230.2 CHR01, CHR1,... chromatin remodeling factor (DDM1) 0.01 OrthoFinder output from all 47 species
LOC_Os09g27060.1 CHR01, CHR1,... chromatin remodeling factor (DDM1) 0.02 OrthoFinder output from all 47 species
Len_g27757 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g29294 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.01 OrthoFinder output from all 47 species
Len_g57697 PKL, GYM, CHR6,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g04983 CHR11 ATPase component *(CHR11/CHR17) of ISWI chromatin... 0.01 OrthoFinder output from all 47 species
MA_104034g0010 CHR01, CHR1,... chromatin remodeling factor (DDM1) 0.05 OrthoFinder output from all 47 species
MA_42406g0010 CHR01, CHR1,... chromatin remodeling factor (DDM1) 0.02 OrthoFinder output from all 47 species
Mp4g12200.1 CHR01, CHR1,... chromatin remodeling factor (DDM1) 0.05 OrthoFinder output from all 47 species
Msp_g44223 CHR11 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Nbi_g04407 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g37964 PKR1, CHR4 CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.01 OrthoFinder output from all 47 species
Pir_g39866 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0073.g017101 CHR17 not classified & original description: CDS=1-2349 0.01 OrthoFinder output from all 47 species
Sam_g14615 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g17278 No alias chromatin remodeling factor *(DDM1) & original description: none 0.03 OrthoFinder output from all 47 species
Smo102612 CHR5 Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Solyc01g090650.1.1 Solyc01g090650 chromatin remodeling factor (Alc) 0.01 OrthoFinder output from all 47 species
Solyc02g085390.4.1 CHR01, CHR1,... chromatin remodeling factor (DDM1) 0.03 OrthoFinder output from all 47 species
Solyc06g054560.3.1 CHR11, Solyc06g054560 chromatin remodeling factor (Iswi) 0.01 OrthoFinder output from all 47 species
Spa_g10521 CHR5 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g13795 CHR01, CHR1,... chromatin remodeling factor *(DDM1) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g24876 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g02199 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.01 OrthoFinder output from all 47 species
Tin_g05645 CHR17 ATPase component *(CHR11/CHR17) of ISWI chromaTin... 0.03 OrthoFinder output from all 47 species
Tin_g08903 CHR01, CHR1,... chromaTin remodeling factor *(DDM1) & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e005517_P002 CHR01, CHR1,... chromatin remodeling factor (DDM1) 0.01 OrthoFinder output from all 47 species
Zm00001e011541_P001 CHR01, CHR1,... chromatin remodeling factor (DDM1) 0.03 OrthoFinder output from all 47 species
Zm00001e017643_P001 CHR17, Zm00001e017643 chromatin remodeling factor (Iswi) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006270 DNA replication initiation IEP HCCA
BP GO:0007186 G protein-coupled receptor signaling pathway IEP HCCA
MF GO:0008658 penicillin binding IEP HCCA
BP GO:0010639 negative regulation of organelle organization IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0031406 carboxylic acid binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0032780 negative regulation of ATP-dependent activity IEP HCCA
BP GO:0033043 regulation of organelle organization IEP HCCA
BP GO:0033044 regulation of chromosome organization IEP HCCA
MF GO:0033218 amide binding IEP HCCA
MF GO:0033293 monocarboxylic acid binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0038166 angiotensin-activated signaling pathway IEP HCCA
CC GO:0042555 MCM complex IEP HCCA
BP GO:0043086 negative regulation of catalytic activity IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0043177 organic acid binding IEP HCCA
BP GO:0043462 regulation of ATP-dependent activity IEP HCCA
BP GO:0044092 negative regulation of molecular function IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0048523 negative regulation of cellular process IEP HCCA
BP GO:0050790 regulation of catalytic activity IEP HCCA
BP GO:0051095 regulation of helicase activity IEP HCCA
BP GO:0051097 negative regulation of helicase activity IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
BP GO:0051129 negative regulation of cellular component organization IEP HCCA
BP GO:0065009 regulation of molecular function IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
MF GO:1901681 sulfur compound binding IEP HCCA
BP GO:1905462 regulation of DNA duplex unwinding IEP HCCA
BP GO:1905463 negative regulation of DNA duplex unwinding IEP HCCA
BP GO:1905774 regulation of DNA helicase activity IEP HCCA
BP GO:1905775 negative regulation of DNA helicase activity IEP HCCA
BP GO:2001251 negative regulation of chromosome organization IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 573 685
No external refs found!