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  5. Cpa|evm.model.tig00000093.133

Cpa|evm.model.tig00000093.133 (ATHDA5, HDA05, HDA5)


Aliases : ATHDA5, HDA05, HDA5

Description : Histone deacetylase 5 OS=Arabidopsis thaliana


Gene families : OG0001559 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001559_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000093.133

Target Alias Description ECC score Gene Family Method Actions
Azfi_s0250.g060221 ATHDA15, HDA15 class-II histone deacetylase & original description: CDS=93-1925 0.01 OrthoFinder output from all 47 species
Dde_g24471 ATHDA15, HDA15 class-II histone deacetylase & original description: none 0.01 OrthoFinder output from all 47 species
GSVIVT01007870001 ATHDA5, HDA05, HDA5 Chromatin organisation.histone modifications.histone... 0.01 OrthoFinder output from all 47 species
GSVIVT01008242001 ATHDA15, HDA15 Chromatin organisation.histone modifications.histone... 0.01 OrthoFinder output from all 47 species
LOC_Os07g06980.1 ATHDA15, HDA15,... class-II histone deacetylase 0.03 OrthoFinder output from all 47 species
LOC_Os07g41090.1 ATHDA5, HDA05,... class-II histone deacetylase 0.01 OrthoFinder output from all 47 species
MA_50170g0010 ATHDA15, HDA15 Histone deacetylase 15 OS=Arabidopsis thaliana... 0.01 OrthoFinder output from all 47 species
Ore_g35187 ATHDA15, HDA15 class-II histone deacetylase & original description: none 0.01 OrthoFinder output from all 47 species
Pnu_g09864 ATHDA15, HDA15 class-II histone deacetylase & original description: none 0.01 OrthoFinder output from all 47 species
Solyc03g115150.4.1 ATHDA5, HDA05,... class-II histone deacetylase 0.02 OrthoFinder output from all 47 species
Tin_g08286 ATHDA15, HDA15 class-II histone deacetylase & original description: none 0.01 OrthoFinder output from all 47 species
Zm00001e032874_P003 ATHDA15, HDA15,... class-II histone deacetylase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003937 IMP cyclohydrolase activity IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004559 alpha-mannosidase activity IEP HCCA
MF GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEP HCCA
MF GO:0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0015923 mannosidase activity IEP HCCA
MF GO:0015924 mannosyl-oligosaccharide mannosidase activity IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP HCCA
MF GO:0019238 cyclohydrolase activity IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
InterPro domains Description Start Stop
IPR023801 His_deacetylse_dom 156 348
No external refs found!