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  5. Cpa|evm.model.tig00000093.10

Cpa|evm.model.tig00000093.10


Description : Cold shock protein 1 OS=Arabidopsis thaliana


Gene families : OG0001037 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001037_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000093.10
Cluster HCCA: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00017p00206510 GRP2B, ATGRP2B,... External stimuli response.temperature.Csd... 0.02 OrthoFinder output from all 47 species
AMTR_s00041p00167350 No alias External stimuli response.temperature.Csd... 0.01 OrthoFinder output from all 47 species
Aop_g12642 GRP2B, ATGRP2B, ATCSP4 cold-responsive mRNA chaperone *(CSD) & original... 0.02 OrthoFinder output from all 47 species
Ceric.13G032000.1 ATCSP2, GRP2,... cold-responsive mRNA chaperone *(CSD) & original... 0.01 OrthoFinder output from all 47 species
Ceric.39G049600.1 GRP2B, ATGRP2B,... cold-responsive mRNA chaperone *(CSD) & original... 0.02 OrthoFinder output from all 47 species
Dde_g01349 ATCSP2, GRP2, CSDP2, CSP2 cold-responsive mRNA chaperone *(CSD) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01024055001 ATCSP2, GRP2, CSDP2, CSP2 External stimuli response.temperature.Csd... 0.04 OrthoFinder output from all 47 species
Mp1g04040.1 GRP2B, ATGRP2B, ATCSP4 RNA chaperone (CSP). mRNA chaperone (CSD) 0.06 OrthoFinder output from all 47 species
Pnu_g06164 ATCSP2, GRP2, CSDP2, CSP2 cold-responsive mRNA chaperone *(CSD) & original... 0.02 OrthoFinder output from all 47 species
Sam_g23946 No alias cold-responsive mRNA chaperone *(CSD) & original... 0.02 OrthoFinder output from all 47 species
Solyc01g111300.4.1 GRP2B, ATGRP2B,... RNA chaperone (CSP). mRNA chaperone (CSD) 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 90 106
IPR001878 Znf_CCHC 42 58
IPR001878 Znf_CCHC 67 82
IPR001878 Znf_CCHC 8 24
No external refs found!