1. Home
  2. Species
  3. Cyanophora paradoxa
  4. Sequence
  5. Cpa|evm.model.tig00000057.93

Cpa|evm.model.tig00000057.93 (PMS1)


Aliases : PMS1

Description : DNA mismatch repair protein PMS1 OS=Arabidopsis thaliana


Gene families : OG0005197 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005197_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000057.93
Cluster HCCA: Cluster_59

Target Alias Description ECC score Gene Family Method Actions
Adi_g058158 PMS1 component *(PMS1) of MLH1-PMS1 heterodimer & original... 0.02 OrthoFinder output from all 47 species
Ala_g08494 PMS1 component *(PMS1) of MLH1-PMS1 heterodimer & original... 0.02 OrthoFinder output from all 47 species
Ceric.21G086600.1 PMS1, Ceric.21G086600 component *(PMS1) of MLH1-PMS1 heterodimer & original... 0.03 OrthoFinder output from all 47 species
Cre04.g227000 PMS1 DNA damage response.DNA repair mechanisms.mismatch... 0.03 OrthoFinder output from all 47 species
GSVIVT01027985001 PMS1 DNA damage response.DNA repair mechanisms.mismatch... 0.01 OrthoFinder output from all 47 species
LOC_Os02g37920.1 PMS1, LOC_Os02g37920 component PMS1 of MLH1-PMS1 heterodimer 0.01 OrthoFinder output from all 47 species
Len_g24503 PMS1 component *(PMS1) of MLH1-PMS1 heterodimer & original... 0.02 OrthoFinder output from all 47 species
Solyc09g074990.4.1 PMS1, Solyc09g074990 component PMS1 of MLH1-PMS1 heterodimer 0.02 OrthoFinder output from all 47 species
Zm00001e022851_P002 PMS1, Zm00001e022851 component PMS1 of MLH1-PMS1 heterodimer 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006298 mismatch repair IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP HCCA
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
InterPro domains Description Start Stop
IPR013507 DNA_mismatch_S5_2-like 166 291
IPR014790 MutL_C 482 597
No external refs found!