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  5. Pnu_g31979

Pnu_g31979 (STO)


Aliases : STO

Description : BBX class-IV transcription factor & original description: none


Gene families : OG0000403 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000403_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g31979

Target Alias Description ECC score Gene Family Method Actions
AT4G38960 No alias B-box type zinc finger family protein 0.03 OrthoFinder output from all 47 species
Aop_g19117 No alias BBX class-IV transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os02g43170.1 LOC_Os02g43170 transcription factor (BBX-DBB) 0.04 OrthoFinder output from all 47 species
LOC_Os06g05890.1 LZF1, STH3,... transcription factor (BBX-DBB) 0.03 OrthoFinder output from all 47 species
Ore_g39232 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005382 No alias BBX class-IV transcription factor & original... 0.02 OrthoFinder output from all 47 species
Solyc12g089240.2.1 STH2, Solyc12g089240 transcription factor (BBX-DBB) 0.02 OrthoFinder output from all 47 species
Zm00001e013262_P001 Zm00001e013262 transcription factor (BBX-DBB) 0.03 OrthoFinder output from all 47 species
Zm00001e016532_P001 LZF1, STH3,... transcription factor (BBX-DBB) 0.03 OrthoFinder output from all 47 species
Zm00001e023122_P002 STH2, Zm00001e023122 transcription factor (BBX-DBB) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016840 carbon-nitrogen lyase activity IEP HCCA
MF GO:0016843 amine-lyase activity IEP HCCA
MF GO:0016844 strictosidine synthase activity IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
InterPro domains Description Start Stop
IPR000315 Znf_B-box 57 93
No external refs found!