ATCG00720 (PETB)

Aliases : PETB

Description : photosynthetic electron transfer B

Gene families : OG0002807 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002807_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: ATCG00720
Cluster	HCCA: Cluster_74

Target	Alias	Description	ECC score	Gene Family Method
AT2G07727	No alias	Di-haem cytochrome, transmembrane;Cytochrome b/b6, C-terminal	0.06	OrthoFinder output from all 47 species
Aev_g24354	No alias	apocytochrome b component of cytochrome c reductase...	0.37	OrthoFinder output from all 47 species
Aev_g27762	PETB	apocytochrome b component *(PetB) of cytochrome b6/f...	0.34	OrthoFinder output from all 47 species
Ala_g35856	No alias	apocytochrome b component of cytochrome c reductase...	0.09	OrthoFinder output from all 47 species
Als_g39169	No alias	not classified & original description: none	0.09	OrthoFinder output from all 47 species
Aob_g16275	No alias	apocytochrome b component of cytochrome c reductase...	0.08	OrthoFinder output from all 47 species
Aop_g43076	No alias	apocytochrome b component of cytochrome c reductase...	0.09	OrthoFinder output from all 47 species
Azfi_s0264.g060907	No alias	not classified & original description: CDS=1-306	0.1	OrthoFinder output from all 47 species
Cba_g67442	No alias	apocytochrome b component of cytochrome c reductase...	0.05	OrthoFinder output from all 47 species
Ceric.05G041700.1	PETB, Ceric.05G041700	not classified & original description: pacid=50577646...	0.3	OrthoFinder output from all 47 species
Ceric.05G044900.1	PETB, Ceric.05G044900	not classified & original description: pacid=50577209...	0.12	OrthoFinder output from all 47 species
Ceric.05G051500.1	PETB, Ceric.05G051500	not classified & original description: pacid=50578079...	0.11	OrthoFinder output from all 47 species
Ceric.16G061200.1	PETB, Ceric.16G061200	apocytochrome b component *(PetB) of cytochrome b6/f...	0.02	OrthoFinder output from all 47 species
Ceric.17G047400.1	Ceric.17G047400	not classified & original description: pacid=50617400...	0.02	OrthoFinder output from all 47 species
Ceric.1Z019500.1	PETB, Ceric.1Z019500	apocytochrome b component *(PetB) of cytochrome b6/f...	0.16	OrthoFinder output from all 47 species
Ceric.1Z020900.1	PETB, Ceric.1Z020900	not classified & original description: pacid=50586386...	0.05	OrthoFinder output from all 47 species
Ceric.1Z163200.1	PETB, Ceric.1Z163200	not classified & original description: pacid=50596955...	0.2	OrthoFinder output from all 47 species
Ceric.1Z190500.1	Ceric.1Z190500	not classified & original description: pacid=50582113...	0.14	OrthoFinder output from all 47 species
Ceric.1Z200500.1	Ceric.1Z200500	not classified & original description: pacid=50618881...	0.36	OrthoFinder output from all 47 species
Ceric.1Z276900.1	Ceric.1Z276900	not classified & original description: pacid=50569323...	0.36	OrthoFinder output from all 47 species
Ceric.1Z297500.1	Ceric.1Z297500	not classified & original description: pacid=50597032...	0.36	OrthoFinder output from all 47 species
Ceric.1Z311700.1	Ceric.1Z311700	not classified & original description: pacid=50567778...	0.36	OrthoFinder output from all 47 species
Ceric.29G003700.1	PETB, Ceric.29G003700	not classified & original description: pacid=50624590...	0.14	OrthoFinder output from all 47 species
Ceric.36G044700.1	PETB, Ceric.36G044700	not classified & original description: pacid=50568540...	0.15	OrthoFinder output from all 47 species
Ceric.38G008400.1	PETB, Ceric.38G008400	not classified & original description: pacid=50579337...	0.3	OrthoFinder output from all 47 species
Dcu_g39082	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Dde_g47960	No alias	apocytochrome b component of cytochrome c reductase...	0.04	OrthoFinder output from all 47 species
GSVIVT01012279001	No alias	Cytochrome b OS=Zea mays	0.05	OrthoFinder output from all 47 species
GSVIVT01018702001	No alias	Cytochrome b OS=Zea mays	0.05	OrthoFinder output from all 47 species
Gb_16762	No alias	cytochrome b component of cytochrome c reductase complex	0.16	OrthoFinder output from all 47 species
Gb_17283	No alias	Cytochrome b6 OS=Welwitschia mirabilis...	0.16	OrthoFinder output from all 47 species
Gb_20951	No alias	Cytochrome b OS=Oryza sativa subsp. japonica...	0.05	OrthoFinder output from all 47 species
Gb_31169	No alias	cytochrome b component of cytochrome c reductase complex	0.02	OrthoFinder output from all 47 species
LOC_Os01g57942.1	PETB, LOC_Os01g57942	apocytochrome b component PetB of cytochrome b6/f complex	0.45	OrthoFinder output from all 47 species
LOC_Os04g16846.1	PETB, LOC_Os04g16846	apocytochrome b component PetB of cytochrome b6/f complex	0.45	OrthoFinder output from all 47 species
LOC_Os10g21324.1	PETB, LOC_Os10g21324	apocytochrome b component PetB of cytochrome b6/f complex	0.45	OrthoFinder output from all 47 species
Len_g40106	No alias	apocytochrome b component of cytochrome c reductase...	0.05	OrthoFinder output from all 47 species
MA_10392603g0010	No alias	Cytochrome b OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
Mp1g00740.1	PETB	Cytochrome b6 OS=Marchantia polymorpha...	0.1	OrthoFinder output from all 47 species
Nbi_g20498	No alias	apocytochrome b component of cytochrome c reductase...	0.13	OrthoFinder output from all 47 species
Ore_g00397	PETB	apocytochrome b component *(PetB) of cytochrome b6/f...	0.22	OrthoFinder output from all 47 species
Pir_g06448	No alias	apocytochrome b component of cytochrome c reductase...	0.11	OrthoFinder output from all 47 species
Pp3c21_5670V3.1	PETD, Pp3c21_5670	photosynthetic electron transfer D	0.05	OrthoFinder output from all 47 species
Ppi_g00989	PETB	apocytochrome b component *(PetB) of cytochrome b6/f...	0.07	OrthoFinder output from all 47 species
Sam_g02910	No alias	apocytochrome b component *(PetB) of cytochrome b6/f...	0.09	OrthoFinder output from all 47 species
Sam_g14362	No alias	apocytochrome b component of cytochrome c reductase...	0.07	OrthoFinder output from all 47 species
Smo137714	PETB	Cytochrome b6 OS=Pinus thunbergii	0.11	OrthoFinder output from all 47 species
Smo139134	No alias	Cytochrome b OS=Marchantia polymorpha	0.1	OrthoFinder output from all 47 species
Solyc00g047200.1.1	Solyc00g047200	Cytochrome b OS=Solanum tuberosum (sp\|p29757\|cyb_soltu : 130.0)	0.07	OrthoFinder output from all 47 species
Solyc00g500240.1.1	Solyc00g500240	cytochrome b component of cytochrome c reductase complex	0.05	OrthoFinder output from all 47 species
Solyc00g500260.1.1	Solyc00g500260	cytochrome b component of cytochrome c reductase...	0.06	OrthoFinder output from all 47 species
Solyc00g500364.1.1	Solyc00g500364	cytochrome b component of cytochrome c reductase complex	0.05	OrthoFinder output from all 47 species
Solyc09g050020.3.1	Solyc09g050020	Cytochrome b OS=Vicia faba (sp\|p05718\|cyb_vicfa : 382.0)	0.04	OrthoFinder output from all 47 species
Spa_g23500	No alias	apocytochrome b component of cytochrome c reductase...	0.1	OrthoFinder output from all 47 species
Tin_g20386	No alias	apocytochrome b component of cytochrome c reductase...	0.1	OrthoFinder output from all 47 species
Zm00001e017084_P001	Zm00001e017084	cytochrome b component of cytochrome c reductase complex	0.03	OrthoFinder output from all 47 species
Zm00001e023252_P001	Zm00001e023252	cytochrome b component of cytochrome c reductase complex	0.03	OrthoFinder output from all 47 species
Zm00001e042242_P001	Zm00001e042242	cytochrome b component of cytochrome c reductase complex	0.03	OrthoFinder output from all 47 species
Zm00001e042335_P001	Zm00001e042335	cytochrome b component of cytochrome c reductase complex	0.03	OrthoFinder output from all 47 species
Zm00001e042463_P001	Zm00001e042463	cytochrome b component of cytochrome c reductase complex	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005976	polysaccharide metabolic process	None	Extended
BP	GO:0006073	cellular glucan metabolic process	None	Extended
BP	GO:0006091	generation of precursor metabolites and energy	RCA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006354	DNA-templated transcription elongation	RCA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009404	toxin metabolic process	None	Extended
BP	GO:0009407	toxin catabolic process	RCA	Interproscan
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009512	cytochrome b6f complex	TAS	Interproscan
CC	GO:0009534	chloroplast thylakoid	IDA	Interproscan
CC	GO:0009535	chloroplast thylakoid membrane	IDA	Interproscan
CC	GO:0009536	plastid	None	Extended
CC	GO:0009579	thylakoid	IDA	Interproscan
CC	GO:0009579	thylakoid	TAS	Interproscan
BP	GO:0009767	photosynthetic electron transport chain	None	Extended
BP	GO:0009773	photosynthetic electron transport in photosystem I	RCA	Interproscan
BP	GO:0009832	plant-type cell wall biogenesis	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010583	response to cyclopentenone	RCA	Interproscan
BP	GO:0014070	response to organic cyclic compound	None	Extended
BP	GO:0015979	photosynthesis	RCA	Interproscan
CC	GO:0016020	membrane	IDA	Interproscan
BP	GO:0016049	cell growth	RCA	Interproscan
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019684	photosynthesis, light reaction	RCA	Interproscan
BP	GO:0019684	photosynthesis, light reaction	TAS	Interproscan
BP	GO:0019748	secondary metabolic process	None	Extended
CC	GO:0019867	outer membrane	None	Extended
MF	GO:0020037	heme binding	TAS	Interproscan
BP	GO:0022900	electron transport chain	None	Extended
BP	GO:0030243	cellulose metabolic process	RCA	Interproscan
CC	GO:0031090	organelle membrane	None	Extended
CC	GO:0031968	organelle outer membrane	None	Extended
CC	GO:0031976	plastid thylakoid	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0034357	photosynthetic membrane	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0040007	growth	None	Extended
CC	GO:0042170	plastid membrane	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0042546	cell wall biogenesis	None	Extended
CC	GO:0042651	thylakoid membrane	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0044042	glucan metabolic process	None	Extended
BP	GO:0044085	cellular component biogenesis	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044262	cellular carbohydrate metabolic process	None	Extended
BP	GO:0044264	cellular polysaccharide metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046906	tetrapyrrole binding	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051273	beta-glucan metabolic process	None	Extended
CC	GO:0055035	plastid thylakoid membrane	None	Extended
CC	GO:0070069	cytochrome complex	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071669	plant-type cell wall organization or biogenesis	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0098588	bounding membrane of organelle	None	Extended
BP	GO:0098754	detoxification	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0000311	plastid large ribosomal subunit	IEP	HCCA
CC	GO:0000312	plastid small ribosomal subunit	IEP	HCCA
CC	GO:0000314	organellar small ribosomal subunit	IEP	HCCA
CC	GO:0000315	organellar large ribosomal subunit	IEP	HCCA
MF	GO:0003735	structural constituent of ribosome	IEP	HCCA
MF	GO:0003959	NADPH dehydrogenase activity	IEP	HCCA
MF	GO:0005198	structural molecule activity	IEP	HCCA
BP	GO:0006412	translation	IEP	HCCA
BP	GO:0006518	peptide metabolic process	IEP	HCCA
BP	GO:0006544	glycine metabolic process	IEP	HCCA
BP	GO:0006546	glycine catabolic process	IEP	HCCA
BP	GO:0006633	fatty acid biosynthetic process	IEP	HCCA
BP	GO:0006636	unsaturated fatty acid biosynthetic process	IEP	HCCA
BP	GO:0006733	obsolete oxidoreduction coenzyme metabolic process	IEP	HCCA
BP	GO:0006743	ubiquinone metabolic process	IEP	HCCA
BP	GO:0006744	ubiquinone biosynthetic process	IEP	HCCA
BP	GO:0006766	vitamin metabolic process	IEP	HCCA
BP	GO:0009071	serine family amino acid catabolic process	IEP	HCCA
BP	GO:0009106	lipoate metabolic process	IEP	HCCA
BP	GO:0009108	obsolete coenzyme biosynthetic process	IEP	HCCA
CC	GO:0009521	photosystem	IEP	HCCA
CC	GO:0009522	photosystem I	IEP	HCCA
CC	GO:0009523	photosystem II	IEP	HCCA
CC	GO:0009533	chloroplast stromal thylakoid	IEP	HCCA
CC	GO:0009538	photosystem I reaction center	IEP	HCCA
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	HCCA
BP	GO:0009694	jasmonic acid metabolic process	IEP	HCCA
BP	GO:0009695	jasmonic acid biosynthetic process	IEP	HCCA
BP	GO:0009765	photosynthesis, light harvesting	IEP	HCCA
BP	GO:0009769	photosynthesis, light harvesting in photosystem II	IEP	HCCA
BP	GO:0010207	photosystem II assembly	IEP	HCCA
BP	GO:0010267	ta-siRNA processing	IEP	HCCA
CC	GO:0010287	plastoglobule	IEP	HCCA
CC	GO:0015935	small ribosomal subunit	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
MF	GO:0016168	chlorophyll binding	IEP	HCCA
MF	GO:0016651	oxidoreductase activity, acting on NAD(P)H	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
BP	GO:0030422	siRNA processing	IEP	HCCA
BP	GO:0033559	unsaturated fatty acid metabolic process	IEP	HCCA
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	HCCA
BP	GO:0035196	miRNA processing	IEP	HCCA
BP	GO:0042180	cellular ketone metabolic process	IEP	HCCA
BP	GO:0042181	ketone biosynthetic process	IEP	HCCA
BP	GO:0043043	peptide biosynthetic process	IEP	HCCA
BP	GO:0043603	amide metabolic process	IEP	HCCA
BP	GO:0043604	amide biosynthetic process	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
CC	GO:0044391	ribosomal subunit	IEP	HCCA
BP	GO:0051607	defense response to virus	IEP	HCCA
BP	GO:0055114	obsolete oxidation-reduction process	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
BP	GO:0070918	regulatory ncRNA processing	IEP	HCCA
CC	GO:0098796	membrane protein complex	IEP	HCCA
BP	GO:0140546	defense response to symbiont	IEP	HCCA
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	HCCA
BP	GO:1901661	quinone metabolic process	IEP	HCCA
BP	GO:1901663	quinone biosynthetic process	IEP	HCCA
CC	GO:1990204	oxidoreductase complex	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005797	Cyt_b/b6_N	22	210

External Links

No external refs found!

ATCG00720 (PETB)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation