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  5. AT5G66560

AT5G66560


Description : Phototropic-responsive NPH3 family protein


Gene families : OG0000772 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000772_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G66560
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
Aop_g12990 No alias substrate adaptor *(NRL) of CUL3-based E3 ubiquitin... 0.02 OrthoFinder output from all 47 species
Aspi01Gene21874.t1 Aspi01Gene21874 substrate adaptor *(NRL) of CUL3-based E3 ubiquitin... 0.03 OrthoFinder output from all 47 species
Aspi01Gene33768.t1 Aspi01Gene33768 substrate adaptor *(NRL) of CUL3-based E3 ubiquitin... 0.03 OrthoFinder output from all 47 species
Aspi01Gene70261.t1 Aspi01Gene70261 substrate adaptor *(NRL) of CUL3-based E3 ubiquitin... 0.03 OrthoFinder output from all 47 species
Cba_g36901 No alias substrate adaptor *(NRL) of CUL3-based E3 ubiquitin... 0.03 OrthoFinder output from all 47 species
Dac_g01718 No alias substrate adaptor *(NRL) of CUL3-based E3 ubiquitin... 0.02 OrthoFinder output from all 47 species
Len_g16969 No alias substrate adaptor *(NRL) of CUL3-based E3 ubiquitin... 0.03 OrthoFinder output from all 47 species
Len_g20736 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g30906 No alias substrate adaptor *(NRL) of CUL3-based E3 ubiquitin... 0.02 OrthoFinder output from all 47 species
Nbi_g08002 No alias substrate adaptor *(NRL) of CUL3-based E3 ubiquitin... 0.03 OrthoFinder output from all 47 species
Ore_g35366 No alias substrate adaptor *(NRL) of CUL3-based E3 ubiquitin... 0.02 OrthoFinder output from all 47 species
Pnu_g33996 No alias substrate adaptor of CUL3-based E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Ppi_g12631 No alias substrate adaptor *(NRL) of CUL3-based E3 ubiquitin... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000293 No alias not classified & original description: CDS=1-2292 0.03 OrthoFinder output from all 47 species
Solyc02g021640.3.1 Solyc02g021640 BTB/POZ domain-containing protein At1g30440... 0.02 OrthoFinder output from all 47 species
Solyc11g066730.2.1 Solyc11g066730 BTB/POZ domain-containing protein At3g44820... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004871 obsolete signal transducer activity ISS Interproscan
CC GO:0005886 plasma membrane IDA Interproscan
CC GO:0005886 plasma membrane ISM Interproscan
BP GO:0009416 response to light stimulus ISS Interproscan
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Type GO Term Name Evidence Source
BP GO:0000003 reproduction IEP HCCA
BP GO:0000280 nuclear division IEP HCCA
BP GO:0000723 telomere maintenance IEP HCCA
BP GO:0000724 double-strand break repair via homologous recombination IEP HCCA
BP GO:0000725 recombinational repair IEP HCCA
BP GO:0002832 negative regulation of response to biotic stimulus IEP HCCA
BP GO:0003006 developmental process involved in reproduction IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006261 DNA-templated DNA replication IEP HCCA
BP GO:0006270 DNA replication initiation IEP HCCA
BP GO:0006275 regulation of DNA replication IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007051 spindle organization IEP HCCA
BP GO:0007059 chromosome segregation IEP HCCA
BP GO:0007129 homologous chromosome pairing at meiosis IEP HCCA
BP GO:0007131 reciprocal meiotic recombination IEP HCCA
BP GO:0007140 male meiotic nuclear division IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
BP GO:0009312 oligosaccharide biosynthetic process IEP HCCA
BP GO:0009639 response to red or far red light IEP HCCA
BP GO:0009653 anatomical structure morphogenesis IEP HCCA
BP GO:0009740 gibberellic acid mediated signaling pathway IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0009900 dehiscence IEP HCCA
BP GO:0009901 anther dehiscence IEP HCCA
BP GO:0009909 regulation of flower development IEP HCCA
BP GO:0009937 regulation of gibberellic acid mediated signaling pathway IEP HCCA
BP GO:0009939 positive regulation of gibberellic acid mediated signaling pathway IEP HCCA
BP GO:0009967 positive regulation of signal transduction IEP HCCA
BP GO:0010112 regulation of systemic acquired resistance IEP HCCA
BP GO:0010113 negative regulation of systemic acquired resistance IEP HCCA
BP GO:0010325 raffinose family oligosaccharide biosynthetic process IEP HCCA
BP GO:0010332 response to gamma radiation IEP HCCA
BP GO:0010389 regulation of G2/M transition of mitotic cell cycle IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010476 gibberellin mediated signaling pathway IEP HCCA
BP GO:0010500 transmitting tissue development IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0010647 positive regulation of cell communication IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
BP GO:0016444 somatic cell DNA recombination IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
BP GO:0016572 obsolete histone phosphorylation IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
MF GO:0018024 histone lysine N-methyltransferase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
CC GO:0019005 SCF ubiquitin ligase complex IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
BP GO:0023056 positive regulation of signaling IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0032102 negative regulation of response to external stimulus IEP HCCA
BP GO:0032200 telomere organization IEP HCCA
BP GO:0032204 regulation of telomere maintenance IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0032502 developmental process IEP HCCA
BP GO:0032504 multicellular organism reproduction IEP HCCA
BP GO:0032957 inositol trisphosphate metabolic process IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
BP GO:0035825 homologous recombination IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
BP GO:0042138 meiotic DNA double-strand break formation IEP HCCA
BP GO:0043247 telomere maintenance in response to DNA damage IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0045787 positive regulation of cell cycle IEP HCCA
BP GO:0046164 alcohol catabolic process IEP HCCA
BP GO:0046174 polyol catabolic process IEP HCCA
BP GO:0046434 organophosphate catabolic process IEP HCCA
BP GO:0046838 phosphorylated carbohydrate dephosphorylation IEP HCCA
BP GO:0046855 inositol phosphate dephosphorylation IEP HCCA
MF GO:0046976 histone H3K27 methyltransferase activity IEP HCCA
BP GO:0048285 organelle fission IEP HCCA
BP GO:0048438 floral whorl development IEP HCCA
BP GO:0048444 floral organ morphogenesis IEP HCCA
BP GO:0048446 petal morphogenesis IEP HCCA
BP GO:0048449 floral organ formation IEP HCCA
BP GO:0048467 gynoecium development IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0048580 regulation of post-embryonic development IEP HCCA
BP GO:0048584 positive regulation of response to stimulus IEP HCCA
BP GO:0048609 multicellular organismal reproductive process IEP HCCA
BP GO:0048646 anatomical structure formation involved in morphogenesis IEP HCCA
BP GO:0048831 regulation of shoot system development IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050793 regulation of developmental process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051052 regulation of DNA metabolic process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051225 spindle assembly IEP HCCA
BP GO:0051239 regulation of multicellular organismal process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0061982 meiosis I cell cycle process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0070192 chromosome organization involved in meiotic cell cycle IEP HCCA
BP GO:0070734 histone H3-K27 methylation IEP HCCA
BP GO:0070925 organelle assembly IEP HCCA
BP GO:0071545 inositol phosphate catabolic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP HCCA
BP GO:0090697 post-embryonic plant organ morphogenesis IEP HCCA
BP GO:0090698 post-embryonic plant morphogenesis IEP HCCA
BP GO:0140013 meiotic nuclear division IEP HCCA
BP GO:0140527 reciprocal homologous recombination IEP HCCA
BP GO:0140694 non-membrane-bounded organelle assembly IEP HCCA
MF GO:0140938 histone H3 methyltransferase activity IEP HCCA
BP GO:1901616 organic hydroxy compound catabolic process IEP HCCA
BP GO:1901987 regulation of cell cycle phase transition IEP HCCA
BP GO:1901990 regulation of mitotic cell cycle phase transition IEP HCCA
BP GO:1902749 regulation of cell cycle G2/M phase transition IEP HCCA
BP GO:1903046 meiotic cell cycle process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:1905392 plant organ morphogenesis IEP HCCA
BP GO:1905393 plant organ formation IEP HCCA
BP GO:2000026 regulation of multicellular organismal development IEP HCCA
BP GO:2000241 regulation of reproductive process IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR027356 NPH3_dom 255 506
No external refs found!