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  5. AT5G65780

AT5G65780 (ATBCAT-5)


Aliases : ATBCAT-5

Description : branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5)


Gene families : OG0002096 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002096_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G65780

Target Alias Description ECC score Gene Family Method Actions
Adi_g018491 LINC3 nuclear lamina lamin-like protein *(CRWN) & original... 0.05 OrthoFinder output from all 47 species
Adi_g055294 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.04 OrthoFinder output from all 47 species
Aev_g06792 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.03 OrthoFinder output from all 47 species
Ala_g08422 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.07 OrthoFinder output from all 47 species
Als_g29067 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.04 OrthoFinder output from all 47 species
Aob_g07969 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.08 OrthoFinder output from all 47 species
Aop_g06258 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene23792.t1 LINC2, Aspi01Gene23792 nuclear lamina lamin-like protein *(CRWN) & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0006.g010369 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0308.g064022 LINC4 nuclear lamina lamin-like protein *(CRWN) & original... 0.03 OrthoFinder output from all 47 species
Ceric.07G023500.1 LINC2, Ceric.07G023500 nuclear lamina lamin-like protein *(CRWN) & original... 0.07 OrthoFinder output from all 47 species
Ceric.31G070800.1 LINC2, Ceric.31G070800 nuclear lamina lamin-like protein *(CRWN) & original... 0.05 OrthoFinder output from all 47 species
Dac_g23399 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.02 OrthoFinder output from all 47 species
Dcu_g09858 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.06 OrthoFinder output from all 47 species
Ehy_g13504 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.04 OrthoFinder output from all 47 species
Ehy_g23134 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01011972001 LINC3 Cytoskeleton.cytoskeleton-nucleoskeleton linking.nuclear... 0.1 OrthoFinder output from all 47 species
GSVIVT01031076001 LINC1 Cytoskeleton.cytoskeleton-nucleoskeleton linking.nuclear... 0.09 OrthoFinder output from all 47 species
Gb_03736 LINC2 CRWN nuclear lamina lamin-like protein 0.03 OrthoFinder output from all 47 species
LOC_Os01g56140.1 LINC4, LOC_Os01g56140 CRWN nuclear lamina lamin-like protein 0.1 OrthoFinder output from all 47 species
LOC_Os02g48010.1 LINC1, LOC_Os02g48010 CRWN nuclear lamina lamin-like protein 0.06 OrthoFinder output from all 47 species
Lfl_g03466 LINC3 nuclear lamina lamin-like protein *(CRWN) & original... 0.04 OrthoFinder output from all 47 species
Mp3g21160.1 LINC2 CRWN nuclear lamina lamin-like protein 0.08 OrthoFinder output from all 47 species
Msp_g26620 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.03 OrthoFinder output from all 47 species
Msp_g42740 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.03 OrthoFinder output from all 47 species
Nbi_g10182 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.04 OrthoFinder output from all 47 species
Ore_g11685 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g19679 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.03 OrthoFinder output from all 47 species
Ore_g28255 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.04 OrthoFinder output from all 47 species
Sam_g14580 No alias nuclear lamina lamin-like protein *(CRWN) & original... 0.07 OrthoFinder output from all 47 species
Solyc02g089800.3.1 LINC1, Solyc02g089800 CRWN nuclear lamina lamin-like protein 0.07 OrthoFinder output from all 47 species
Solyc02g091960.4.1 LINC4, Solyc02g091960 CRWN nuclear lamina lamin-like protein 0.1 OrthoFinder output from all 47 species
Solyc03g045050.4.1 LINC1, Solyc03g045050 CRWN nuclear lamina lamin-like protein 0.06 OrthoFinder output from all 47 species
Spa_g26205 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.03 OrthoFinder output from all 47 species
Spa_g47575 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.02 OrthoFinder output from all 47 species
Tin_g01292 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.04 OrthoFinder output from all 47 species
Zm00001e019705_P002 LINC4, Zm00001e019705 CRWN nuclear lamina lamin-like protein 0.08 OrthoFinder output from all 47 species
Zm00001e023357_P001 LINC1, Zm00001e023357 CRWN nuclear lamina lamin-like protein 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity ISS Interproscan
MF GO:0004084 branched-chain-amino-acid transaminase activity IGI Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005739 mitochondrion IDA Interproscan
BP GO:0009407 toxin catabolic process RCA Interproscan
CC GO:0009507 chloroplast IDA Interproscan
CC GO:0009507 chloroplast ISM Interproscan
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Type GO Term Name Evidence Source
CC GO:0000785 chromatin IEP HCCA
BP GO:0002097 tRNA wobble base modification IEP HCCA
BP GO:0002100 tRNA wobble adenosine to inosine editing IEP HCCA
BP GO:0003002 regionalization IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004000 adenosine deaminase activity IEP HCCA
MF GO:0004888 transmembrane signaling receptor activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005652 nuclear lamina IEP HCCA
CC GO:0005819 spindle IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006346 DNA methylation-dependent heterochromatin formation IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006382 adenosine to inosine editing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0006997 nucleus organization IEP HCCA
BP GO:0007059 chromosome segregation IEP HCCA
BP GO:0007062 sister chromatid cohesion IEP HCCA
BP GO:0007389 pattern specification process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008251 tRNA-specific adenosine deaminase activity IEP HCCA
CC GO:0008278 cohesin complex IEP HCCA
BP GO:0008284 positive regulation of cell population proliferation IEP HCCA
BP GO:0009292 horizontal gene transfer IEP HCCA
BP GO:0009294 DNA-mediated transformation IEP HCCA
CC GO:0009527 plastid outer membrane IEP HCCA
BP GO:0009605 response to external stimulus IEP HCCA
BP GO:0009606 tropism IEP HCCA
BP GO:0009628 response to abiotic stimulus IEP HCCA
BP GO:0009629 response to gravity IEP HCCA
BP GO:0009630 gravitropism IEP HCCA
CC GO:0009707 chloroplast outer membrane IEP HCCA
BP GO:0009799 specification of symmetry IEP HCCA
BP GO:0009855 determination of bilateral symmetry IEP HCCA
BP GO:0009887 animal organ morphogenesis IEP HCCA
BP GO:0009888 tissue development IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010014 meristem initiation IEP HCCA
BP GO:0010051 xylem and phloem pattern formation IEP HCCA
BP GO:0010073 meristem maintenance IEP HCCA
BP GO:0010305 leaf vascular tissue pattern formation IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010588 cotyledon vascular tissue pattern formation IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0010638 positive regulation of organelle organization IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
CC GO:0016363 nuclear matrix IEP HCCA
BP GO:0016553 base conversion or substitution editing IEP HCCA
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP HCCA
MF GO:0019239 deaminase activity IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0031507 heterochromatin formation IEP HCCA
CC GO:0031969 chloroplast membrane IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
CC GO:0034399 nuclear periphery IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0038023 signaling receptor activity IEP HCCA
BP GO:0040029 epigenetic regulation of gene expression IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0045036 protein targeting to chloroplast IEP HCCA
BP GO:0045787 positive regulation of cell cycle IEP HCCA
BP GO:0045814 negative regulation of gene expression, epigenetic IEP HCCA
BP GO:0045931 positive regulation of mitotic cell cycle IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0048364 root development IEP HCCA
BP GO:0048439 flower morphogenesis IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0051130 positive regulation of cellular component organization IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0070828 heterochromatin organization IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0072596 establishment of protein localization to chloroplast IEP HCCA
BP GO:0072598 protein localization to chloroplast IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0140718 facultative heterochromatin formation IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001544 Aminotrans_IV 133 371
No external refs found!