AT5G62600

Description : ARM repeat superfamily protein

Gene families : OG0004537 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004537_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G62600
Cluster	HCCA: Cluster_130

Target	Alias	Description	ECC score	Gene Family Method
Aev_g24041	No alias	nucleocytoplasmic transport karyopherin *(MOS14) &...	0.02	OrthoFinder output from all 47 species
Als_g01133	No alias	nucleocytoplasmic transport karyopherin *(MOS14) &...	0.07	OrthoFinder output from all 47 species
Aob_g33942	No alias	nucleocytoplasmic transport karyopherin *(MOS14) &...	0.03	OrthoFinder output from all 47 species
Aspi01Gene04735.t1	Aspi01Gene04735	nucleocytoplasmic transport karyopherin *(MOS14) &...	0.03	OrthoFinder output from all 47 species
Cba_g11571	No alias	nucleocytoplasmic transport karyopherin *(MOS14) &...	0.03	OrthoFinder output from all 47 species
Ceric.07G095100.1	Ceric.07G095100	nucleocytoplasmic transport karyopherin *(MOS14) &...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000970.1	No alias	No description available	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001027.19	No alias	No description available	0.01	OrthoFinder output from all 47 species
Dcu_g43936	No alias	nucleocytoplasmic transport karyopherin *(MOS14) &...	0.04	OrthoFinder output from all 47 species
GSVIVT01007840001	No alias	Protein translocation.nucleus.nucleocytoplasmic...	0.03	OrthoFinder output from all 47 species
LOC_Os10g33770.1	LOC_Os10g33770	TNPO3 nucleocytoplasmic transport karyopherin	0.06	OrthoFinder output from all 47 species
Len_g16413	No alias	nucleocytoplasmic transport karyopherin *(MOS14) &...	0.03	OrthoFinder output from all 47 species
Lfl_g36168	No alias	nucleocytoplasmic transport karyopherin *(MOS14) &...	0.04	OrthoFinder output from all 47 species
MA_181638g0010	No alias	TNPO3 nucleocytoplasmic transport karyopherin	0.02	OrthoFinder output from all 47 species
Mp8g15200.1	No alias	TNPO3 nucleocytoplasmic transport karyopherin	0.03	OrthoFinder output from all 47 species
Msp_g00702	No alias	nucleocytoplasmic transport karyopherin *(MOS14) &...	0.03	OrthoFinder output from all 47 species
Ppi_g22253	No alias	nucleocytoplasmic transport karyopherin *(MOS14) &...	0.03	OrthoFinder output from all 47 species
Smo100270	No alias	Protein translocation.nucleus.nucleocytoplasmic...	0.07	OrthoFinder output from all 47 species
Tin_g20641	No alias	nucleocytoplasmic transport karyopherin *(MOS14) &...	0.02	OrthoFinder output from all 47 species
Zm00001e004571_P001	Zm00001e004571	TNPO3 nucleocytoplasmic transport karyopherin	0.08	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
BP	GO:0006606	protein import into nucleus	IMP	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	None	Extended
BP	GO:0006913	nucleocytoplasmic transport	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033365	protein localization to organelle	None	Extended
BP	GO:0034504	protein localization to nucleus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043484	regulation of RNA splicing	IMP	Interproscan
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051169	nuclear transport	None	Extended
BP	GO:0051170	import into nucleus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0072594	establishment of protein localization to organelle	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0000325	plant-type vacuole	IEP	HCCA
MF	GO:0004175	endopeptidase activity	IEP	HCCA
MF	GO:0004197	cysteine-type endopeptidase activity	IEP	HCCA
MF	GO:0004843	cysteine-type deubiquitinase activity	IEP	HCCA
MF	GO:0005085	guanyl-nucleotide exchange factor activity	IEP	HCCA
CC	GO:0005622	intracellular anatomical structure	IEP	HCCA
CC	GO:0005773	vacuole	IEP	HCCA
CC	GO:0005774	vacuolar membrane	IEP	HCCA
CC	GO:0005911	cell-cell junction	IEP	HCCA
BP	GO:0006486	protein glycosylation	IEP	HCCA
BP	GO:0006487	protein N-linked glycosylation	IEP	HCCA
BP	GO:0006623	protein targeting to vacuole	IEP	HCCA
BP	GO:0006813	potassium ion transport	IEP	HCCA
BP	GO:0006897	endocytosis	IEP	HCCA
BP	GO:0007033	vacuole organization	IEP	HCCA
BP	GO:0007034	vacuolar transport	IEP	HCCA
MF	GO:0008233	peptidase activity	IEP	HCCA
MF	GO:0008234	cysteine-type peptidase activity	IEP	HCCA
CC	GO:0009506	plasmodesma	IEP	HCCA
MF	GO:0015079	potassium ion transmembrane transporter activity	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
BP	GO:0019321	pentose metabolic process	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
MF	GO:0019783	ubiquitin-like protein peptidase activity	IEP	HCCA
CC	GO:0030054	cell junction	IEP	HCCA
BP	GO:0030243	cellulose metabolic process	IEP	HCCA
BP	GO:0030244	cellulose biosynthetic process	IEP	HCCA
MF	GO:0030276	clathrin binding	IEP	HCCA
MF	GO:0030695	GTPase regulator activity	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
BP	GO:0042732	D-xylose metabolic process	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0043413	macromolecule glycosylation	IEP	HCCA
BP	GO:0051274	beta-glucan biosynthetic process	IEP	HCCA
MF	GO:0060589	nucleoside-triphosphatase regulator activity	IEP	HCCA
BP	GO:0070085	glycosylation	IEP	HCCA
CC	GO:0070161	anchoring junction	IEP	HCCA
BP	GO:0072665	protein localization to vacuole	IEP	HCCA
BP	GO:0072666	establishment of protein localization to vacuole	IEP	HCCA
CC	GO:0098588	bounding membrane of organelle	IEP	HCCA
MF	GO:0101005	deubiquitinase activity	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA
MF	GO:0140677	molecular function activator activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001494	Importin-beta_N	26	91
IPR013598	Exportin-1/Importin-b-like	98	243

External Links

No external refs found!

AT5G62600

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation