AT5G62000 (HSS, ARF1-BP, ARF2, ORE14)

Aliases : HSS, ARF1-BP, ARF2, ORE14

Description : auxin response factor 2

Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G62000

Target	Alias	Description	ECC score	Gene Family Method
Adi_g088063	ARF6	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene64733.t1	HSS, ARF1-BP,...	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.03G061000.1	HSS, ARF1-BP,...	ARF-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Dac_g23659	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g46643	HSS, ARF1-BP, ARF2, ORE14	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g09257	ARF19, IAA22, ARF11	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01037136001	ARF1	RNA biosynthesis.transcriptional activation.B3...	0.03	OrthoFinder output from all 47 species
LOC_Os02g41800.1	ARF16, LOC_Os02g41800	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Len_g24419	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g05590	ARF16	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g18657	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Mp1g12750.1	ARF6	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Ore_g08684	ARF6	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g10460	ARF6	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g42998	ARF6	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g42999	ARF6	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g35318	ARF3, ETT	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g06380	ARF6	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g17376	ARF16	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Smo115320	ARF6	Auxin response factor 25 OS=Oryza sativa subsp. japonica	0.03	OrthoFinder output from all 47 species
Smo117217	ARF6	RNA biosynthesis.transcriptional activation.B3...	0.03	OrthoFinder output from all 47 species
Spa_g05322	ARF8, ATARF8	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e017798_P003	HSS, ARF1-BP,...	transcription factor (ARF)	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008285	negative regulation of cell population proliferation	IMP	Interproscan
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009737	response to abscisic acid	IMP	Interproscan
BP	GO:0009838	abscission	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009890	negative regulation of biosynthetic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009900	dehiscence	None	Extended
BP	GO:0009909	regulation of flower development	None	Extended
BP	GO:0009911	positive regulation of flower development	IMP	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010047	fruit dehiscence	IMP	Interproscan
BP	GO:0010150	leaf senescence	IMP	Interproscan
BP	GO:0010227	floral organ abscission	IMP	Interproscan
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031324	negative regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031327	negative regulation of cellular biosynthetic process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0033993	response to lipid	None	Extended
BP	GO:0042127	regulation of cell population proliferation	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0042743	hydrogen peroxide metabolic process	None	Extended
BP	GO:0042744	hydrogen peroxide catabolic process	RCA	Interproscan
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IDA	Interproscan
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0045892	negative regulation of DNA-templated transcription	IMP	Interproscan
BP	GO:0045892	negative regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0045934	negative regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0048481	plant ovule development	IMP	Interproscan
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0048580	regulation of post-embryonic development	None	Extended
BP	GO:0048582	positive regulation of post-embryonic development	None	Extended
BP	GO:0048609	multicellular organismal reproductive process	None	Extended
BP	GO:0048831	regulation of shoot system development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051094	positive regulation of developmental process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0051240	positive regulation of multicellular organismal process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051253	negative regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0072593	reactive oxygen species metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090693	plant organ senescence	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097305	response to alcohol	None	Extended
BP	GO:0099402	plant organ development	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended
BP	GO:1902679	negative regulation of RNA biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903507	negative regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000026	regulation of multicellular organismal development	None	Extended
BP	GO:2000241	regulation of reproductive process	None	Extended
BP	GO:2000243	positive regulation of reproductive process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000578	embryonic axis specification	IEP	HCCA
MF	GO:0003729	mRNA binding	IEP	HCCA
MF	GO:0003730	mRNA 3'-UTR binding	IEP	HCCA
MF	GO:0004674	protein serine/threonine kinase activity	IEP	HCCA
BP	GO:0005996	monosaccharide metabolic process	IEP	HCCA
BP	GO:0006006	glucose metabolic process	IEP	HCCA
BP	GO:0006007	glucose catabolic process	IEP	HCCA
BP	GO:0007166	cell surface receptor signaling pathway	IEP	HCCA
BP	GO:0007167	enzyme-linked receptor protein signaling pathway	IEP	HCCA
BP	GO:0007169	transmembrane receptor protein tyrosine kinase signaling pathway	IEP	HCCA
BP	GO:0007389	pattern specification process	IEP	HCCA
BP	GO:0009698	phenylpropanoid metabolic process	IEP	HCCA
BP	GO:0009798	axis specification	IEP	HCCA
BP	GO:0009808	lignin metabolic process	IEP	HCCA
BP	GO:0009846	pollen germination	IEP	HCCA
BP	GO:0009880	embryonic pattern specification	IEP	HCCA
BP	GO:0009888	tissue development	IEP	HCCA
BP	GO:0009942	longitudinal axis specification	IEP	HCCA
BP	GO:0009945	radial axis specification	IEP	HCCA
BP	GO:0010073	meristem maintenance	IEP	HCCA
BP	GO:0010152	pollen maturation	IEP	HCCA
BP	GO:0016052	carbohydrate catabolic process	IEP	HCCA
BP	GO:0019318	hexose metabolic process	IEP	HCCA
BP	GO:0019320	hexose catabolic process	IEP	HCCA
BP	GO:0021700	developmental maturation	IEP	HCCA
BP	GO:0046365	monosaccharide catabolic process	IEP	HCCA
BP	GO:0048507	meristem development	IEP	HCCA
BP	GO:0048508	embryonic meristem development	IEP	HCCA
BP	GO:0048653	anther development	IEP	HCCA
BP	GO:0051259	protein complex oligomerization	IEP	HCCA
BP	GO:0051260	protein homooligomerization	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR010525	ARF_dom	290	372
IPR003340	B3_DNA-bd	164	265
IPR033389	AUX/IAA_dom	716	769
IPR033389	AUX/IAA_dom	779	818

External Links

No external refs found!

AT5G62000 (HSS, ARF1-BP, ARF2, ORE14)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation