AT5G61700 (ATH16, ATATH16)

Aliases : ATH16, ATATH16

Description : ABC2 homolog 16

Gene families : OG0001879 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001879_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G61700

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00078p00140160	ATATH6, ATH6,...	Solute transport.primary active transport.ABC...	0.02	OrthoFinder output from all 47 species
AT3G47740	ATATH2, ATH2, ABCA3	ABC2 homolog 2	0.04	OrthoFinder output from all 47 species
Aev_g01577	ATATH6, ATH6	subfamily ABCA transporter & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g04431	ATATH6, ATH6	subfamily ABCA transporter & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0022.g016229	ATATH6, ATH6	subfamily ABCA transporter & original description: CDS=234-3275	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000057.67	ATATH4, ABCA5, ATH4	Solute transport.primary active transport.ABC...	0.01	OrthoFinder output from all 47 species
Cre14.g618400	ATH7, ATATH7	Solute transport.primary active transport.ABC...	0.01	OrthoFinder output from all 47 species
Mp7g18420.1	ATH7, ATATH7	subfamily ABCA transporter	0.03	OrthoFinder output from all 47 species
Msp_g11278	ATATH6, ATH6	subfamily ABCA transporter & original description: none	0.05	OrthoFinder output from all 47 species
Ppi_g10749	ATATH6, ATH6	subfamily ABCA transporter & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g16539	No alias	subfamily ABCA transporter & original description: none	0.02	OrthoFinder output from all 47 species
Smo171117	ATATH6, ATH6	Solute transport.primary active transport.ABC...	0.03	OrthoFinder output from all 47 species
Smo268954	ATATH6, ATH6	Solute transport.primary active transport.ABC...	0.03	OrthoFinder output from all 47 species
Solyc06g070920.3.1	ATATH6, ATH6,...	subfamily ABCA transporter	0.05	OrthoFinder output from all 47 species
Solyc06g070930.3.1	ATATH6, ATH6,...	ABC transporter A family member 3 OS=Arabidopsis...	0.05	OrthoFinder output from all 47 species
Zm00001e022343_P002	ATATH6, ATH6,...	subfamily ABCA transporter	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000902	cell morphogenesis	None	Extended
BP	GO:0000904	cell morphogenesis involved in differentiation	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0008150	biological_process	None	Extended
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009536	plastid	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009664	plant-type cell wall organization	None	Extended
BP	GO:0009826	unidimensional cell growth	None	Extended
BP	GO:0009827	plant-type cell wall modification	RCA	Interproscan
BP	GO:0009860	pollen tube growth	RCA	Interproscan
BP	GO:0009932	cell tip growth	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016049	cell growth	None	Extended
BP	GO:0022414	reproductive process	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0040007	growth	None	Extended
BP	GO:0042545	cell wall modification	None	Extended
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	ISS	Interproscan
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0048588	developmental cell growth	None	Extended
BP	GO:0048589	developmental growth	None	Extended
BP	GO:0060560	developmental growth involved in morphogenesis	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071669	plant-type cell wall organization or biogenesis	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005092	GDP-dissociation inhibitor activity	IEP	HCCA
MF	GO:0005094	Rho GDP-dissociation inhibitor activity	IEP	HCCA
MF	GO:0005216	monoatomic ion channel activity	IEP	HCCA
BP	GO:0006874	cellular calcium ion homeostasis	IEP	HCCA
BP	GO:0006875	cellular metal ion homeostasis	IEP	HCCA
MF	GO:0008565	obsolete protein transporter activity	IEP	HCCA
BP	GO:0009306	protein secretion	IEP	HCCA
BP	GO:0009566	fertilization	IEP	HCCA
BP	GO:0009567	double fertilization forming a zygote and endosperm	IEP	HCCA
BP	GO:0010208	pollen wall assembly	IEP	HCCA
BP	GO:0010584	pollen exine formation	IEP	HCCA
BP	GO:0010927	cellular component assembly involved in morphogenesis	IEP	HCCA
MF	GO:0016175	superoxide-generating NAD(P)H oxidase activity	IEP	HCCA
CC	GO:0016324	apical plasma membrane	IEP	HCCA
MF	GO:0016651	oxidoreductase activity, acting on NAD(P)H	IEP	HCCA
MF	GO:0030246	carbohydrate binding	IEP	HCCA
MF	GO:0030551	cyclic nucleotide binding	IEP	HCCA
MF	GO:0030695	GTPase regulator activity	IEP	HCCA
BP	GO:0032940	secretion by cell	IEP	HCCA
BP	GO:0035592	establishment of protein localization to extracellular region	IEP	HCCA
BP	GO:0046903	secretion	IEP	HCCA
BP	GO:0048868	pollen tube development	IEP	HCCA
MF	GO:0050664	oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor	IEP	HCCA
BP	GO:0055065	metal ion homeostasis	IEP	HCCA
BP	GO:0055074	calcium ion homeostasis	IEP	HCCA
MF	GO:0060589	nucleoside-triphosphatase regulator activity	IEP	HCCA
BP	GO:0071692	protein localization to extracellular region	IEP	HCCA
CC	GO:0098590	plasma membrane region	IEP	HCCA
BP	GO:0098771	inorganic ion homeostasis	IEP	HCCA
BP	GO:0140352	export from cell	IEP	HCCA
MF	GO:0140677	molecular function activator activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003439	ABC_transporter-like_ATP-bd	590	732

External Links

No external refs found!

AT5G61700 (ATH16, ATATH16)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation