AT5G58420

Description : Ribosomal protein S4 (RPS4A) family protein

Gene families : OG0002077 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002077_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G58420

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00041p00058440	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.23	OrthoFinder output from all 47 species
Adi_g088324	No alias	component *(eS4) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Adi_g103622	No alias	component *(eS4) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Adi_g129583	No alias	component *(eS4) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Aev_g05171	No alias	component *(eS4) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Ala_g01298	No alias	component *(eS4) of small ribosomal-subunit (SSU)...	0.15	OrthoFinder output from all 47 species
Als_g17795	No alias	component *(eS4) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Aop_g02046	No alias	component *(eS4) of small ribosomal-subunit (SSU)...	0.2	OrthoFinder output from all 47 species
Aspi01Gene65977.t1	Aspi01Gene65977	component *(eS4) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Azfi_s0001.g000501	No alias	component *(eS4) of small ribosomal-subunit (SSU)...	0.17	OrthoFinder output from all 47 species
Azfi_s0091.g042854	No alias	component *(eS4) of small ribosomal-subunit (SSU)...	0.23	OrthoFinder output from all 47 species
Cba_g17641	No alias	component *(eS4) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Ceric.01G129200.1	Ceric.01G129200	component *(eS4) of small ribosomal-subunit (SSU)...	0.31	OrthoFinder output from all 47 species
Ceric.10G002500.1	Ceric.10G002500	component *(eS4) of small ribosomal-subunit (SSU)...	0.31	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021433.38	No alias	40S ribosomal protein S4 OS=Oryza sativa subsp. japonica	0.24	OrthoFinder output from all 47 species
Cre06.g308250	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.22	OrthoFinder output from all 47 species
Dac_g14355	No alias	component *(eS4) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Dcu_g18005	No alias	component *(eS4) of small ribosomal-subunit (SSU)...	0.15	OrthoFinder output from all 47 species
Dcu_g50161	No alias	component *(eS4) of small ribosomal-subunit (SSU)...	0.2	OrthoFinder output from all 47 species
Dde_g03190	No alias	component *(eS4) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Ehy_g05596	No alias	component *(eS4) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
GSVIVT01024668001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.29	OrthoFinder output from all 47 species
GSVIVT01030295001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.33	OrthoFinder output from all 47 species
GSVIVT01032756001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.16	OrthoFinder output from all 47 species
Gb_18544	No alias	component RPS4 of SSU proteome	0.06	OrthoFinder output from all 47 species
Gb_18548	No alias	component RPS4 of SSU proteome	0.07	OrthoFinder output from all 47 species
Gb_18550	No alias	component RPS4 of SSU proteome	0.04	OrthoFinder output from all 47 species
LOC_Os01g25610.1	LOC_Os01g25610	component RPS4 of SSU proteome	0.3	OrthoFinder output from all 47 species
LOC_Os02g01560.1	LOC_Os02g01560	component RPS4 of SSU proteome	0.33	OrthoFinder output from all 47 species
LOC_Os05g30530.1	LOC_Os05g30530	component RPS4 of SSU proteome	0.22	OrthoFinder output from all 47 species
Len_g17934	No alias	component *(eS4) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Len_g50156	No alias	component *(eS4) of small ribosomal-subunit (SSU)...	0.13	OrthoFinder output from all 47 species
Lfl_g00770	No alias	component *(eS4) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Lfl_g29718	No alias	component *(eS4) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
MA_127596g0010	No alias	component RPS4 of SSU proteome	0.2	OrthoFinder output from all 47 species
Mp8g03280.1	No alias	component RPS4 of SSU proteome	0.35	OrthoFinder output from all 47 species
Mp8g03290.1	No alias	component RPS4 of SSU proteome	0.03	OrthoFinder output from all 47 species
Msp_g12425	No alias	component *(eS4) of small ribosomal-subunit (SSU)...	0.17	OrthoFinder output from all 47 species
Nbi_g03427	No alias	component *(eS4) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Ore_g42187	No alias	component *(eS4) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Pir_g12385	No alias	component *(eS4) of small ribosomal-subunit (SSU)...	0.08	OrthoFinder output from all 47 species
Pir_g60718	No alias	component *(eS4) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Pp3c11_3690V3.1	Pp3c11_3690	Ribosomal protein S4 (RPS4A) family protein	0.21	OrthoFinder output from all 47 species
Pp3c1_8290V3.1	Pp3c1_8290	Ribosomal protein S4 (RPS4A) family protein	0.23	OrthoFinder output from all 47 species
Pp3c25_3736V3.1	Pp3c25_3736	Ribosomal protein S4 (RPS4A) family protein	0.05	OrthoFinder output from all 47 species
Pp3c7_23800V3.1	Pp3c7_23800	Ribosomal protein S4 (RPS4A) family protein	0.16	OrthoFinder output from all 47 species
Ppi_g06230	No alias	component *(eS4) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Ppi_g56478	No alias	component *(eS4) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0190.g025275	No alias	component *(eS4) of small ribosomal-subunit (SSU)...	0.15	OrthoFinder output from all 47 species
Sam_g13009	No alias	component *(eS4) of small ribosomal-subunit (SSU)...	0.17	OrthoFinder output from all 47 species
Sam_g27349	No alias	component *(eS4) of small ribosomal-subunit (SSU)...	0.16	OrthoFinder output from all 47 species
Sam_g27350	No alias	component *(eS4) of small ribosomal-subunit (SSU)...	0.21	OrthoFinder output from all 47 species
Sam_g38267	No alias	component *(eS4) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Smo148442	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.17	OrthoFinder output from all 47 species
Solyc02g070330.4.1	Solyc02g070330	component RPS4 of SSU proteome	0.35	OrthoFinder output from all 47 species
Solyc02g070340.3.1	Solyc02g070340	component RPS4 of SSU proteome	0.41	OrthoFinder output from all 47 species
Spa_g05578	No alias	component *(eS4) of small ribosomal-subunit (SSU)...	0.25	OrthoFinder output from all 47 species
Spa_g05579	No alias	component *(eS4) of small ribosomal-subunit (SSU)...	0.25	OrthoFinder output from all 47 species
Spa_g17898	No alias	component *(eS4) of small ribosomal-subunit (SSU)...	0.26	OrthoFinder output from all 47 species
Spa_g23890	No alias	not classified & original description: none	0.25	OrthoFinder output from all 47 species
Spa_g44321	No alias	component *(eS4) of small ribosomal-subunit (SSU)...	0.09	OrthoFinder output from all 47 species
Tin_g02542	No alias	component *(eS4) of small ribosomal-subunit (SSU)...	0.18	OrthoFinder output from all 47 species
Zm00001e006307_P001	Zm00001e006307	component RPS4 of SSU proteome	0.42	OrthoFinder output from all 47 species
Zm00001e011676_P001	Zm00001e011676	component RPS4 of SSU proteome	0.4	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0001510	RNA methylation	RCA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	ISS	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005730	nucleolus	IDA	Interproscan
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
CC	GO:0005840	ribosome	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006412	translation	ISS	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0015935	small ribosomal subunit	None	Extended
CC	GO:0016020	membrane	IDA	Interproscan
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0022626	cytosolic ribosome	IDA	Interproscan
CC	GO:0022627	cytosolic small ribosomal subunit	IDA	Interproscan
CC	GO:0022627	cytosolic small ribosomal subunit	ISS	Interproscan
BP	GO:0032259	methylation	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000028	ribosomal small subunit assembly	IEP	HCCA
BP	GO:0000447	endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	HCCA
BP	GO:0000461	endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	HCCA
BP	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	HCCA
BP	GO:0000469	cleavage involved in rRNA processing	IEP	HCCA
BP	GO:0000478	endonucleolytic cleavage involved in rRNA processing	IEP	HCCA
BP	GO:0000479	endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	HCCA
CC	GO:0005618	cell wall	IEP	HCCA
CC	GO:0005773	vacuole	IEP	HCCA
CC	GO:0005774	vacuolar membrane	IEP	HCCA
CC	GO:0005886	plasma membrane	IEP	HCCA
CC	GO:0005911	cell-cell junction	IEP	HCCA
BP	GO:0005975	carbohydrate metabolic process	IEP	HCCA
BP	GO:0005996	monosaccharide metabolic process	IEP	HCCA
BP	GO:0006006	glucose metabolic process	IEP	HCCA
BP	GO:0006090	pyruvate metabolic process	IEP	HCCA
BP	GO:0006091	generation of precursor metabolites and energy	IEP	HCCA
BP	GO:0006094	gluconeogenesis	IEP	HCCA
BP	GO:0006096	glycolytic process	IEP	HCCA
BP	GO:0006163	purine nucleotide metabolic process	IEP	HCCA
BP	GO:0006165	nucleoside diphosphate phosphorylation	IEP	HCCA
BP	GO:0006220	pyrimidine nucleotide metabolic process	IEP	HCCA
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006407	rRNA export from nucleus	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	HCCA
BP	GO:0006757	ATP generation from ADP	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
BP	GO:0006970	response to osmotic stress	IEP	HCCA
BP	GO:0007275	multicellular organism development	IEP	HCCA
BP	GO:0009117	nucleotide metabolic process	IEP	HCCA
BP	GO:0009132	nucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009135	purine nucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009141	nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009144	purine nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009150	purine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009179	purine ribonucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009185	ribonucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009199	ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009205	purine ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009218	pyrimidine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009220	pyrimidine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009259	ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
CC	GO:0009506	plasmodesma	IEP	HCCA
CC	GO:0009507	chloroplast	IEP	HCCA
CC	GO:0009536	plastid	IEP	HCCA
BP	GO:0009628	response to abiotic stimulus	IEP	HCCA
BP	GO:0009651	response to salt stress	IEP	HCCA
BP	GO:0009664	plant-type cell wall organization	IEP	HCCA
BP	GO:0009719	response to endogenous stimulus	IEP	HCCA
BP	GO:0009725	response to hormone	IEP	HCCA
BP	GO:0009735	response to cytokinin	IEP	HCCA
BP	GO:0009790	embryo development	IEP	HCCA
BP	GO:0009793	embryo development ending in seed dormancy	IEP	HCCA
BP	GO:0010035	response to inorganic substance	IEP	HCCA
BP	GO:0010038	response to metal ion	IEP	HCCA
CC	GO:0015934	large ribosomal subunit	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
BP	GO:0016051	carbohydrate biosynthetic process	IEP	HCCA
BP	GO:0016052	carbohydrate catabolic process	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
BP	GO:0016310	phosphorylation	IEP	HCCA
CC	GO:0016592	mediator complex	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0019318	hexose metabolic process	IEP	HCCA
BP	GO:0019319	hexose biosynthetic process	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
BP	GO:0019637	organophosphate metabolic process	IEP	HCCA
BP	GO:0019693	ribose phosphate metabolic process	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
BP	GO:0022618	ribonucleoprotein complex assembly	IEP	HCCA
CC	GO:0022625	cytosolic large ribosomal subunit	IEP	HCCA
CC	GO:0030054	cell junction	IEP	HCCA
CC	GO:0030312	external encapsulating structure	IEP	HCCA
BP	GO:0030490	maturation of SSU-rRNA	IEP	HCCA
MF	GO:0030515	snoRNA binding	IEP	HCCA
CC	GO:0030684	preribosome	IEP	HCCA
CC	GO:0030686	90S preribosome	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
BP	GO:0031123	RNA 3'-end processing	IEP	HCCA
BP	GO:0031125	rRNA 3'-end processing	IEP	HCCA
CC	GO:0032040	small-subunit processome	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0042221	response to chemical	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0042255	ribosome assembly	IEP	HCCA
BP	GO:0042256	cytosolic ribosome assembly	IEP	HCCA
BP	GO:0042274	ribosomal small subunit biogenesis	IEP	HCCA
BP	GO:0042545	cell wall modification	IEP	HCCA
BP	GO:0043628	regulatory ncRNA 3'-end processing	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
BP	GO:0044281	small molecule metabolic process	IEP	HCCA
BP	GO:0045229	external encapsulating structure organization	IEP	HCCA
BP	GO:0046031	ADP metabolic process	IEP	HCCA
BP	GO:0046034	ATP metabolic process	IEP	HCCA
BP	GO:0046364	monosaccharide biosynthetic process	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
BP	GO:0046686	response to cadmium ion	IEP	HCCA
BP	GO:0046939	nucleotide phosphorylation	IEP	HCCA
BP	GO:0050896	response to stimulus	IEP	HCCA
BP	GO:0051029	rRNA transport	IEP	HCCA
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	HCCA
CC	GO:0070161	anchoring junction	IEP	HCCA
BP	GO:0070925	organelle assembly	IEP	HCCA
BP	GO:0071554	cell wall organization or biogenesis	IEP	HCCA
BP	GO:0071555	cell wall organization	IEP	HCCA
BP	GO:0071669	plant-type cell wall organization or biogenesis	IEP	HCCA
BP	GO:0071826	ribonucleoprotein complex subunit organization	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:0072521	purine-containing compound metabolic process	IEP	HCCA
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	HCCA
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0090407	organophosphate biosynthetic process	IEP	HCCA
BP	GO:0090501	RNA phosphodiester bond hydrolysis	IEP	HCCA
BP	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic	IEP	HCCA
BP	GO:0097064	ncRNA export from nucleus	IEP	HCCA
CC	GO:0098588	bounding membrane of organelle	IEP	HCCA
BP	GO:0140694	non-membrane-bounded organelle assembly	IEP	HCCA
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	HCCA
BP	GO:1901575	organic substance catabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR013845	Ribosomal_S4e_central_region	95	169
IPR032277	40S_S4_C	212	258
IPR013843	Ribosomal_S4e_N	3	39
IPR002942	S4_RNA-bd	44	90
IPR005824	KOW	177	210

External Links

No external refs found!

AT5G58420

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation