AT5G57970

Description : DNA glycosylase superfamily protein

Gene families : OG0001057 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001057_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G57970
Cluster	HCCA: Cluster_45

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00006p00251960	evm_27.TU.AmTr_v1...	No description available	0.03	OrthoFinder output from all 47 species
AMTR_s00032p00209300	evm_27.TU.AmTr_v1...	No description available	0.03	OrthoFinder output from all 47 species
AT1G13635	No alias	DNA glycosylase superfamily protein	0.04	OrthoFinder output from all 47 species
AT1G15970	No alias	DNA glycosylase superfamily protein	0.04	OrthoFinder output from all 47 species
AT5G44680	No alias	DNA glycosylase superfamily protein	0.06	OrthoFinder output from all 47 species
Adi_g008949	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g008950	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g050770	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g054795	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g03652	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene28457.t1	Aspi01Gene28457	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0173.g055846	No alias	not classified & original description: CDS=1-1386	0.03	OrthoFinder output from all 47 species
Ceric.37G026400.1	Ceric.37G026400	not classified & original description: pacid=50615533...	0.03	OrthoFinder output from all 47 species
Dac_g08060	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01010060001	No alias	No description available	0.04	OrthoFinder output from all 47 species
LOC_Os06g44050.1	LOC_Os06g44050	no hits & (original description: none)	0.06	OrthoFinder output from all 47 species
LOC_Os08g38170.1	LOC_Os08g38170	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
Len_g07998	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g04057	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g36534	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
MA_114043g0010	No alias	no hits & (original description: none)	0.05	OrthoFinder output from all 47 species
Mp3g04160.1	No alias	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Msp_g08833	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g11422	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g15736	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Solyc05g010800.3.1	Solyc05g010800	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Tin_g14899	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e003412_P001	Zm00001e003412	no hits & (original description: none)	0.05	OrthoFinder output from all 47 species
Zm00001e009836_P001	Zm00001e009836	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
Zm00001e019556_P001	Zm00001e019556	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Zm00001e030438_P002	Zm00001e030438	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003905	alkylbase DNA N-glycosylase activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	ISS	Interproscan
BP	GO:0006304	DNA modification	None	Extended
BP	GO:0006305	DNA alkylation	None	Extended
BP	GO:0006306	DNA methylation	RCA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008725	DNA-3-methyladenine glycosylase activity	ISS	Interproscan
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
MF	GO:0016799	hydrolase activity, hydrolyzing N-glycosyl compounds	None	Extended
MF	GO:0019104	DNA N-glycosylase activity	None	Extended
BP	GO:0032259	methylation	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
MF	GO:0043733	DNA-3-methylbase glycosylase activity	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044728	DNA methylation or demethylation	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000038	very long-chain fatty acid metabolic process	IEP	HCCA
MF	GO:0003774	cytoskeletal motor activity	IEP	HCCA
MF	GO:0003777	microtubule motor activity	IEP	HCCA
BP	GO:0006633	fatty acid biosynthetic process	IEP	HCCA
BP	GO:0006643	membrane lipid metabolic process	IEP	HCCA
BP	GO:0006665	sphingolipid metabolic process	IEP	HCCA
MF	GO:0008238	exopeptidase activity	IEP	HCCA
BP	GO:0009624	response to nematode	IEP	HCCA
BP	GO:0010075	regulation of meristem growth	IEP	HCCA
BP	GO:0016125	sterol metabolic process	IEP	HCCA
BP	GO:0016126	sterol biosynthetic process	IEP	HCCA
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	HCCA
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	HCCA
MF	GO:0016805	dipeptidase activity	IEP	HCCA
MF	GO:0018454	acetoacetyl-CoA reductase activity	IEP	HCCA
BP	GO:0030148	sphingolipid biosynthetic process	IEP	HCCA
BP	GO:0042335	cuticle development	IEP	HCCA
BP	GO:0042761	very long-chain fatty acid biosynthetic process	IEP	HCCA
MF	GO:0045703	ketoreductase activity	IEP	HCCA
BP	GO:0046467	membrane lipid biosynthetic process	IEP	HCCA
BP	GO:0046519	sphingoid metabolic process	IEP	HCCA
BP	GO:0046520	sphingoid biosynthetic process	IEP	HCCA
BP	GO:0048653	anther development	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005019	Adenine_glyco	162	335

External Links

No external refs found!

AT5G57970

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation