AT5G54490 (PBP1)

Aliases : PBP1

Description : pinoid-binding protein 1

Gene families : OG0001109 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001109_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G54490
Cluster	HCCA: Cluster_62

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00234p00014000	evm_27.TU.AmTr_v1...	Calcium-binding protein KIC OS=Arabidopsis thaliana	0.08	OrthoFinder output from all 47 species
AMTR_s00234p00015090	evm_27.TU.AmTr_v1...	Calcium-binding protein KIC OS=Arabidopsis thaliana	0.05	OrthoFinder output from all 47 species
Adi_g087432	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g05269	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Aev_g09810	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aev_g15929	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ala_g35274	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Als_g59479	PBP1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g02623	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g70045	No alias	not classified & original description: none	0.07	OrthoFinder output from all 47 species
Aspi01Gene49045.t1	PBP1, Aspi01Gene49045	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene63044.t1	PBP1, Aspi01Gene63044	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene63068.t1	PBP1, Aspi01Gene63068	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Ceric.24G000200.1	Ceric.24G000200	not classified & original description: pacid=50629224...	0.06	OrthoFinder output from all 47 species
Ceric.24G000300.1	Ceric.24G000300	not classified & original description: pacid=50628799...	0.04	OrthoFinder output from all 47 species
Ceric.30G059500.1	PBP1, Ceric.30G059500	not classified & original description: pacid=50608497...	0.04	OrthoFinder output from all 47 species
Ceric.30G059700.1	PBP1, Ceric.30G059700	not classified & original description: pacid=50608022...	0.04	OrthoFinder output from all 47 species
Ceric.30G075700.1	PBP1, Ceric.30G075700	not classified & original description: pacid=50608449...	0.03	OrthoFinder output from all 47 species
Ceric.30G075800.1	PBP1, Ceric.30G075800	not classified & original description: pacid=50608432...	0.03	OrthoFinder output from all 47 species
Ceric.30G075900.1	PBP1, Ceric.30G075900	not classified & original description: pacid=50609408...	0.03	OrthoFinder output from all 47 species
Dac_g19238	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Dac_g21484	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
GSVIVT01014539001	PBP1	Calcium-binding protein KRP1 OS=Arabidopsis thaliana	0.07	OrthoFinder output from all 47 species
Gb_17267	No alias	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
Gb_30620	No alias	Calcium-binding protein KIC OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
LOC_Os01g57470.1	PBP1, LOC_Os01g57470	Calcium-binding protein PBP1 OS=Arabidopsis thaliana...	0.04	OrthoFinder output from all 47 species
LOC_Os06g46950.1	LOC_Os06g46950	Calcium-binding protein KIC OS=Arabidopsis thaliana...	0.09	OrthoFinder output from all 47 species
MA_10212526g0010	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
MA_1999194g0010	No alias	Calcium-binding protein KRP1 OS=Arabidopsis thaliana...	0.04	OrthoFinder output from all 47 species
MA_25900g0010	No alias	Calcium-binding protein KIC OS=Arabidopsis thaliana...	0.08	OrthoFinder output from all 47 species
MA_25900g0020	No alias	Calcium-binding protein KIC OS=Arabidopsis thaliana...	0.05	OrthoFinder output from all 47 species
MA_32393g0010	No alias	Calcium-binding protein KIC OS=Arabidopsis thaliana...	0.04	OrthoFinder output from all 47 species
MA_48747g0010	No alias	Calcium-binding protein KIC OS=Arabidopsis thaliana...	0.05	OrthoFinder output from all 47 species
MA_7489059g0010	No alias	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
MA_8085699g0010	No alias	no hits & (original description: none)	0.05	OrthoFinder output from all 47 species
Msp_g09603	PBP1	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Nbi_g19618	PBP1	not classified & original description: none	0.08	OrthoFinder output from all 47 species
Nbi_g36268	PBP1	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g09084	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Pir_g57595	PBP1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g12451	No alias	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Pnu_g26313	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g33911	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g25489	No alias	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Solyc02g079720.1.1	PBP1, Solyc02g079720	Calcium-binding protein KRP1 OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
Solyc07g053050.1.1	Solyc07g053050	Calcium-binding protein KRP1 OS=Arabidopsis thaliana...	0.11	OrthoFinder output from all 47 species
Solyc10g006660.3.1	Solyc10g006660	Calcium-binding protein KRP1 OS=Arabidopsis thaliana...	0.1	OrthoFinder output from all 47 species
Solyc10g006700.1.1	Solyc10g006700	Calcium-binding protein KRP1 OS=Arabidopsis thaliana...	0.11	OrthoFinder output from all 47 species
Spa_g56723	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e013045_P001	Zm00001e013045	Calcium-binding protein KIC OS=Arabidopsis thaliana...	0.07	OrthoFinder output from all 47 species
Zm00001e019618_P001	PBP1, Zm00001e019618	Calcium-binding protein PBP1 OS=Arabidopsis thaliana...	0.09	OrthoFinder output from all 47 species
Zm00001e025269_P001	Zm00001e025269	Calcium-binding protein KIC OS=Arabidopsis thaliana...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0001101	response to acid chemical	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005509	calcium ion binding	ISS	Interproscan
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006970	response to osmotic stress	None	Extended
BP	GO:0006972	hyperosmotic response	None	Extended
BP	GO:0007165	signal transduction	RCA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009414	response to water deprivation	RCA	Interproscan
BP	GO:0009415	response to water	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009651	response to salt stress	None	Extended
BP	GO:0009692	ethylene metabolic process	None	Extended
BP	GO:0009693	ethylene biosynthetic process	RCA	Interproscan
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009723	response to ethylene	RCA	Interproscan
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009733	response to auxin	IEP	Interproscan
BP	GO:0009733	response to auxin	RCA	Interproscan
BP	GO:0009737	response to abscisic acid	RCA	Interproscan
BP	GO:0009738	abscisic acid-activated signaling pathway	RCA	Interproscan
BP	GO:0009753	response to jasmonic acid	RCA	Interproscan
BP	GO:0009755	hormone-mediated signaling pathway	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0010583	response to cyclopentenone	RCA	Interproscan
BP	GO:0014070	response to organic cyclic compound	None	Extended
BP	GO:0033993	response to lipid	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0042538	hyperosmotic salinity response	RCA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043449	cellular alkene metabolic process	None	Extended
BP	GO:0043450	alkene biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070542	response to fatty acid	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0097305	response to alcohol	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0120251	hydrocarbon biosynthetic process	None	Extended
BP	GO:0120252	hydrocarbon metabolic process	None	Extended
BP	GO:0120254	olefinic compound metabolic process	None	Extended
BP	GO:0120255	olefinic compound biosynthetic process	None	Extended
BP	GO:1900673	olefin metabolic process	None	Extended
BP	GO:1900674	olefin biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000160	phosphorelay signal transduction system	IEP	HCCA
BP	GO:0000165	MAPK cascade	IEP	HCCA
BP	GO:0000302	response to reactive oxygen species	IEP	HCCA
BP	GO:0002237	response to molecule of bacterial origin	IEP	HCCA
BP	GO:0002252	immune effector process	IEP	HCCA
BP	GO:0002376	immune system process	IEP	HCCA
BP	GO:0002679	respiratory burst involved in defense response	IEP	HCCA
MF	GO:0003700	DNA-binding transcription factor activity	IEP	HCCA
BP	GO:0006952	defense response	IEP	HCCA
BP	GO:0006979	response to oxidative stress	IEP	HCCA
BP	GO:0009314	response to radiation	IEP	HCCA
BP	GO:0009416	response to light stimulus	IEP	HCCA
BP	GO:0009595	detection of biotic stimulus	IEP	HCCA
BP	GO:0009611	response to wounding	IEP	HCCA
BP	GO:0009612	response to mechanical stimulus	IEP	HCCA
BP	GO:0009642	response to light intensity	IEP	HCCA
BP	GO:0009644	response to high light intensity	IEP	HCCA
BP	GO:0009646	response to absence of light	IEP	HCCA
BP	GO:0009694	jasmonic acid metabolic process	IEP	HCCA
BP	GO:0009695	jasmonic acid biosynthetic process	IEP	HCCA
BP	GO:0009696	salicylic acid metabolic process	IEP	HCCA
BP	GO:0009697	salicylic acid biosynthetic process	IEP	HCCA
BP	GO:0009751	response to salicylic acid	IEP	HCCA
BP	GO:0009873	ethylene-activated signaling pathway	IEP	HCCA
BP	GO:0010193	response to ozone	IEP	HCCA
BP	GO:0010200	response to chitin	IEP	HCCA
BP	GO:0010243	response to organonitrogen compound	IEP	HCCA
BP	GO:0010286	heat acclimation	IEP	HCCA
BP	GO:0010310	regulation of hydrogen peroxide metabolic process	IEP	HCCA
BP	GO:0016045	detection of bacterium	IEP	HCCA
BP	GO:0018958	phenol-containing compound metabolic process	IEP	HCCA
MF	GO:0019899	enzyme binding	IEP	HCCA
MF	GO:0019900	kinase binding	IEP	HCCA
MF	GO:0019901	protein kinase binding	IEP	HCCA
BP	GO:0030968	endoplasmic reticulum unfolded protein response	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
BP	GO:0033037	polysaccharide localization	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
BP	GO:0034976	response to endoplasmic reticulum stress	IEP	HCCA
BP	GO:0035556	intracellular signal transduction	IEP	HCCA
BP	GO:0043069	negative regulation of programmed cell death	IEP	HCCA
BP	GO:0043900	obsolete regulation of multi-organism process	IEP	HCCA
BP	GO:0045730	respiratory burst	IEP	HCCA
BP	GO:0046189	phenol-containing compound biosynthetic process	IEP	HCCA
BP	GO:0050688	regulation of defense response to virus	IEP	HCCA
BP	GO:0050691	regulation of defense response to virus by host	IEP	HCCA
BP	GO:0051606	detection of stimulus	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
BP	GO:0052542	defense response by callose deposition	IEP	HCCA
BP	GO:0052545	callose localization	IEP	HCCA
BP	GO:0060548	negative regulation of cell death	IEP	HCCA
BP	GO:0098543	detection of other organism	IEP	HCCA
BP	GO:0098581	detection of external biotic stimulus	IEP	HCCA
MF	GO:0140110	transcription regulator activity	IEP	HCCA
BP	GO:1901698	response to nitrogen compound	IEP	HCCA
BP	GO:2000377	regulation of reactive oxygen species metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002048	EF_hand_dom	51	103

External Links

No external refs found!

AT5G54490 (PBP1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation