AT5G53860 (emb2737, EMB64)

Aliases : emb2737, EMB64

Description : embryo defective 2737

Gene families : OG0008639 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008639_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G53860

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00068p00160530	emb2737, EMB64,...	No description available	0.02	OrthoFinder output from all 47 species
Ala_g11753	emb2737, EMB64	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g01312	emb2737, EMB64	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Dde_g14757	emb2737, EMB64	not classified & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01014313001	emb2737, EMB64	No description available	0.04	OrthoFinder output from all 47 species
Lfl_g05374	emb2737, EMB64	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Mp3g10630.1	emb2737, EMB64	no hits & (original description: none)	0.05	OrthoFinder output from all 47 species
Sacu_v1.1_s0072.g016933	emb2737, EMB64	not classified & original description: CDS=280-1677	0.06	OrthoFinder output from all 47 species
Sam_g48963	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Solyc12g013890.2.1	emb2737, EMB64,...	no hits & (original description: none)	0.1	OrthoFinder output from all 47 species
Spa_g39929	emb2737, EMB64	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g07292	emb2737, EMB64	not classified & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	ND	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006605	protein targeting	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	None	Extended
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009526	plastid envelope	None	Extended
CC	GO:0009536	plastid	None	Extended
BP	GO:0009790	embryo development	None	Extended
BP	GO:0009793	embryo development ending in seed dormancy	IMP	Interproscan
BP	GO:0009793	embryo development ending in seed dormancy	NAS	Interproscan
CC	GO:0009941	chloroplast envelope	IDA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0022414	reproductive process	None	Extended
CC	GO:0031967	organelle envelope	None	Extended
CC	GO:0031975	envelope	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033365	protein localization to organelle	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0045036	protein targeting to chloroplast	RCA	Interproscan
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0072594	establishment of protein localization to organelle	None	Extended
BP	GO:0072596	establishment of protein localization to chloroplast	None	Extended
BP	GO:0072598	protein localization to chloroplast	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000470	maturation of LSU-rRNA	IEP	HCCA
BP	GO:0000488	maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	IEP	HCCA
BP	GO:0000489	maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	IEP	HCCA
MF	GO:0004326	tetrahydrofolylpolyglutamate synthase activity	IEP	HCCA
CC	GO:0005759	mitochondrial matrix	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006730	one-carbon metabolic process	IEP	HCCA
CC	GO:0009501	amyloplast	IEP	HCCA
BP	GO:0009657	plastid organization	IEP	HCCA
MF	GO:0009982	pseudouridine synthase activity	IEP	HCCA
BP	GO:0010103	stomatal complex morphogenesis	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
BP	GO:0016226	iron-sulfur cluster assembly	IEP	HCCA
MF	GO:0016866	intramolecular transferase activity	IEP	HCCA
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	HCCA
MF	GO:0016881	acid-amino acid ligase activity	IEP	HCCA
BP	GO:0030490	maturation of SSU-rRNA	IEP	HCCA
BP	GO:0031163	metallo-sulfur cluster assembly	IEP	HCCA
CC	GO:0031974	membrane-enclosed lumen	IEP	HCCA
BP	GO:0032544	plastid translation	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
CC	GO:0043233	organelle lumen	IEP	HCCA
BP	GO:0048481	plant ovule development	IEP	HCCA
CC	GO:0070013	intracellular organelle lumen	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:0090351	seedling development	IEP	HCCA
BP	GO:0090626	plant epidermis morphogenesis	IEP	HCCA

No InterPro domains available for this sequence

External Links

No external refs found!

AT5G53860 (emb2737, EMB64)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation