AT5G53860 (emb2737, EMB64)


Aliases : emb2737, EMB64

Description : embryo defective 2737


Gene families : OG0008639 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008639_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G53860

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00068p00160530 emb2737, EMB64,... No description available 0.02 OrthoFinder output from all 47 species
Ala_g11753 emb2737, EMB64 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g01312 emb2737, EMB64 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g14757 emb2737, EMB64 not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01014313001 emb2737, EMB64 No description available 0.04 OrthoFinder output from all 47 species
Lfl_g05374 emb2737, EMB64 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Mp3g10630.1 emb2737, EMB64 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0072.g016933 emb2737, EMB64 not classified & original description: CDS=280-1677 0.06 OrthoFinder output from all 47 species
Sam_g48963 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc12g013890.2.1 emb2737, EMB64,... no hits & (original description: none) 0.1 OrthoFinder output from all 47 species
Spa_g39929 emb2737, EMB64 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g07292 emb2737, EMB64 not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0009507 chloroplast IDA Interproscan
BP GO:0009793 embryo development ending in seed dormancy IMP Interproscan
BP GO:0009793 embryo development ending in seed dormancy NAS Interproscan
CC GO:0009941 chloroplast envelope IDA Interproscan
BP GO:0045036 protein targeting to chloroplast RCA Interproscan
(compatible with
Type GO Term Name Evidence Source
BP GO:0000470 maturation of LSU-rRNA IEP HCCA
BP GO:0000488 maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) IEP HCCA
BP GO:0000489 maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) IEP HCCA
MF GO:0004326 tetrahydrofolylpolyglutamate synthase activity IEP HCCA
CC GO:0005759 mitochondrial matrix IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006730 one-carbon metabolic process IEP HCCA
CC GO:0009501 amyloplast IEP HCCA
BP GO:0009657 plastid organization IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0010103 stomatal complex morphogenesis IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0016226 iron-sulfur cluster assembly IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016881 acid-amino acid ligase activity IEP HCCA
BP GO:0030490 maturation of SSU-rRNA IEP HCCA
BP GO:0031163 metallo-sulfur cluster assembly IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
BP GO:0032544 plastid translation IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
BP GO:0048481 plant ovule development IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090351 seedling development IEP HCCA
BP GO:0090626 plant epidermis morphogenesis IEP HCCA

No InterPro domains available for this sequence

No external refs found!