1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. AT5G53680

AT5G53680


Description : RNA-binding (RRM/RBD/RNP motifs) family protein


Gene families : OG0000717 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000717_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G53680
Cluster HCCA: Cluster_55

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00099p00115860 evm_27.TU.AmTr_v1... Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Azfi_s0442.g070359 No alias not classified & original description: CDS=461-1399 0.01 OrthoFinder output from all 47 species
Dde_g31082 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc11g044470.3.1 Solyc11g044470 Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0000398 mRNA splicing, via spliceosome RCA Interproscan
MF GO:0003676 nucleic acid binding ISS Interproscan
MF GO:0003723 RNA binding ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0006457 protein folding RCA Interproscan
BP GO:0008150 biological_process ND Interproscan
BP GO:0009408 response to heat RCA Interproscan
BP GO:0009644 response to high light intensity RCA Interproscan
BP GO:0042542 response to hydrogen peroxide RCA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004067 asparaginase activity IEP HCCA
MF GO:0004659 prenyltransferase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005769 early endosome IEP HCCA
CC GO:0005851 eukaryotic translation initiation factor 2B complex IEP HCCA
BP GO:0006446 regulation of translational initiation IEP HCCA
BP GO:0006516 glycoprotein catabolic process IEP HCCA
BP GO:0006528 asparagine metabolic process IEP HCCA
BP GO:0006530 asparagine catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009064 glutamine family amino acid metabolic process IEP HCCA
BP GO:0009065 glutamine family amino acid catabolic process IEP HCCA
BP GO:0009068 aspartate family amino acid catabolic process IEP HCCA
BP GO:0009100 glycoprotein metabolic process IEP HCCA
BP GO:0009970 cellular response to sulfate starvation IEP HCCA
CC GO:0010009 cytoplasmic side of endosome membrane IEP HCCA
BP GO:0016197 endosomal transport IEP HCCA
BP GO:0016482 cytosolic transport IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
BP GO:0032527 protein exit from endoplasmic reticulum IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
BP GO:0033345 asparagine catabolic process via L-aspartate IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0045022 early endosome to late endosome transport IEP HCCA
BP GO:0045787 positive regulation of cell cycle IEP HCCA
BP GO:0046903 secretion IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
CC GO:0098552 side of membrane IEP HCCA
CC GO:0098562 cytoplasmic side of membrane IEP HCCA
BP GO:0098927 vesicle-mediated transport between endosomal compartments IEP HCCA
BP GO:0140352 export from cell IEP HCCA
BP GO:1901136 carbohydrate derivative catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 15 72
No external refs found!