AT5G52170 (HDG7)

Aliases : HDG7

Description : homeodomain GLABROUS 7

Gene families : OG0000253 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000253_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G52170

Target	Alias	Description	ECC score	Gene Family Method
AT4G00730	ANL2, AHDP	Homeobox-leucine zipper family protein / lipid-binding...	0.04	OrthoFinder output from all 47 species
Als_g05720	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g13002	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
GSVIVT01010600001	ANL2, AHDP	RNA biosynthesis.transcriptional activation.HB...	0.03	OrthoFinder output from all 47 species
Nbi_g13790	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0003.g001922	ATML1	HD-ZIP IV-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005255	ATML1	HD-ZIP IV-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Solyc09g015110.2.1	Solyc09g015110	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Zm00001e019597_P001	PDF2, Zm00001e019597	transcription factor (HD-ZIP IV)	0.02	OrthoFinder output from all 47 species
Zm00001e040312_P001	PDF2, Zm00001e040312	transcription factor (HD-ZIP IV)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISS	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	ISS	Interproscan
BP	GO:0006473	protein acetylation	RCA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043543	protein acylation	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IDA	Interproscan
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0042991	obsolete transcription factor import into nucleus	IEP	HCCA
BP	GO:0048366	leaf development	IEP	HCCA
BP	GO:0048827	phyllome development	IEP	HCCA
BP	GO:0099402	plant organ development	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001356	Homeobox_dom	59	113
IPR002913	START_lipid-bd_dom	224	426

External Links

No external refs found!

AT5G52170 (HDG7)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation