AT5G51910

Description : TCP family transcription factor

Gene families : OG0000443 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000443_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G51910

Target	Alias	Description	ECC score	Gene Family Method
Adi_g003885	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g021930	AtTCP14, TCP14	TCP-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g058017	No alias	circAdian clock activation factor *(TCP20) & original...	0.03	OrthoFinder output from all 47 species
Adi_g115586	AtTCP14, TCP14	TCP-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g33212	No alias	TCP-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g14354	AtTCP14, TCP14	TCP-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0049.g030896	No alias	TCP-type transcription factor & original description: CDS=1-1743	0.03	OrthoFinder output from all 47 species
Ehy_g26686	AT-TCP20, TCP20,...	TCP-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01019876001	No alias	RNA biosynthesis.transcriptional activation.TCP...	0.02	OrthoFinder output from all 47 species
LOC_Os01g69980.1	AT-TCP20, TCP20,...	transcription factor (TCP). TCP20 circadian clock...	0.02	OrthoFinder output from all 47 species
LOC_Os02g51280.1	LOC_Os02g51280	transcription factor (TCP)	0.02	OrthoFinder output from all 47 species
LOC_Os08g43160.1	LOC_Os08g43160	transcription factor (TCP)	0.02	OrthoFinder output from all 47 species
Len_g58006	No alias	TCP-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g00471	AT-TCP20, TCP20,...	TCP-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g06765	No alias	TCP-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g13049	AtTCP14, TCP14	TCP-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Smo441321	No alias	RNA biosynthesis.transcriptional activation.TCP...	0.03	OrthoFinder output from all 47 species
Solyc09g008030.1.1	Solyc09g008030	transcription factor (TCP)	0.03	OrthoFinder output from all 47 species
Zm00001e003744_P001	Zm00001e003744	transcription factor (TCP)	0.02	OrthoFinder output from all 47 species
Zm00001e016271_P001	Zm00001e016271	transcription factor (TCP). CHE circadian clock repression factor	0.02	OrthoFinder output from all 47 species
Zm00001e028426_P001	AT-TCP20, TCP20,...	transcription factor (TCP). TCP20 circadian clock...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031347	regulation of defense response	IMP	Interproscan
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0080134	regulation of response to stress	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	HCCA
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	HCCA
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	HCCA
BP	GO:0000724	double-strand break repair via homologous recombination	IEP	HCCA
BP	GO:0000725	recombinational repair	IEP	HCCA
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
MF	GO:0003697	single-stranded DNA binding	IEP	HCCA
MF	GO:0004089	carbonate dehydratase activity	IEP	HCCA
MF	GO:0004527	exonuclease activity	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0006884	cell volume homeostasis	IEP	HCCA
BP	GO:0008361	regulation of cell size	IEP	HCCA
BP	GO:0008380	RNA splicing	IEP	HCCA
BP	GO:0009648	photoperiodism	IEP	HCCA
BP	GO:0009649	entrainment of circadian clock	IEP	HCCA
BP	GO:0009685	gibberellin metabolic process	IEP	HCCA
BP	GO:0009686	gibberellin biosynthetic process	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
BP	GO:0016101	diterpenoid metabolic process	IEP	HCCA
BP	GO:0016102	diterpenoid biosynthetic process	IEP	HCCA
CC	GO:0016514	SWI/SNF complex	IEP	HCCA
BP	GO:0042752	regulation of circadian rhythm	IEP	HCCA
BP	GO:0043153	entrainment of circadian clock by photoperiod	IEP	HCCA
BP	GO:0048573	photoperiodism, flowering	IEP	HCCA
BP	GO:0048653	anther development	IEP	HCCA
MF	GO:0050897	cobalt ion binding	IEP	HCCA
BP	GO:0051302	regulation of cell division	IEP	HCCA
CC	GO:0070603	SWI/SNF superfamily-type complex	IEP	HCCA
CC	GO:1904949	ATPase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR017887	TF_TCP_subgr	56	131

External Links

No external refs found!

AT5G51910

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation