AT5G51300

Description : splicing factor-related

Gene families : OG0000568 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000568_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G51300

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00078p00155240	evm_27.TU.AmTr_v1...	RNA processing.RNA splicing.U2-type-intron-specific...	0.03	OrthoFinder output from all 47 species
Adi_g014374	No alias	pre-mRNA splicing factor *(SF1) & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g057109	No alias	pre-mRNA splicing factor *(SF1) & original description: none	0.04	OrthoFinder output from all 47 species
Adi_g058568	No alias	pre-mRNA splicing factor *(SF1) & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g087207	No alias	pre-mRNA splicing factor *(SF1) & original description: none	0.06	OrthoFinder output from all 47 species
Ala_g02342	No alias	pre-mRNA splicing factor *(SF1) & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g07951	No alias	pre-mRNA splicing factor *(SF1) & original description: none	0.04	OrthoFinder output from all 47 species
Ala_g13487	No alias	pre-mRNA splicing factor *(SF1) & original description: none	0.03	OrthoFinder output from all 47 species
Als_g32042	No alias	pre-mRNA splicing factor *(SF1) & original description: none	0.03	OrthoFinder output from all 47 species
Als_g52019	No alias	pre-mRNA splicing factor *(SF1) & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene26398.t1	Aspi01Gene26398	pre-mRNA splicing factor *(SF1) & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g01316	No alias	pre-mRNA splicing factor *(SF1) & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g78771	No alias	pre-mRNA splicing factor *(SF1) & original description: none	0.04	OrthoFinder output from all 47 species
Ceric.01G100600.1	Ceric.01G100600	pre-mRNA splicing factor *(SF1) & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.06G040400.1	Ceric.06G040400	pre-mRNA splicing factor *(SF1) & original description:...	0.04	OrthoFinder output from all 47 species
Ceric.25G061400.1	Ceric.25G061400	pre-mRNA splicing factor *(SF1) & original description:...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001154.10	No alias	RNA processing.RNA splicing.U2-type-intron-specific...	0.04	OrthoFinder output from all 47 species
Cre09.g386731	No alias	RNA processing.RNA splicing.U2-type-intron-specific...	0.03	OrthoFinder output from all 47 species
Dac_g07163	No alias	pre-mRNA splicing factor *(SF1) & original description: none	0.02	OrthoFinder output from all 47 species
Dac_g09477	No alias	pre-mRNA splicing factor *(SF1) & original description: none	0.02	OrthoFinder output from all 47 species
Dac_g21025	No alias	pre-mRNA splicing factor *(SF1) & original description: none	0.04	OrthoFinder output from all 47 species
Dcu_g09594	No alias	pre-mRNA splicing factor *(SF1) & original description: none	0.05	OrthoFinder output from all 47 species
Dcu_g16800	No alias	pre-mRNA splicing factor *(SF1) & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g23085	No alias	pre-mRNA splicing factor *(SF1) & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g04018	No alias	pre-mRNA splicing factor *(SF1) & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g16716	No alias	pre-mRNA splicing factor *(SF1) & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g23974	No alias	pre-mRNA splicing factor *(SF1) & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01014212001	No alias	RNA processing.RNA splicing.U2-type-intron-specific...	0.03	OrthoFinder output from all 47 species
Gb_09287	No alias	pre-mRNA splicing factor (SF1)	0.03	OrthoFinder output from all 47 species
Gb_19921	No alias	pre-mRNA splicing factor (SF1)	0.06	OrthoFinder output from all 47 species
Gb_41039	No alias	pre-mRNA splicing factor (SF1)	0.04	OrthoFinder output from all 47 species
LOC_Os08g01070.2	LOC_Os08g01070	no hits & (original description: none)	0.05	OrthoFinder output from all 47 species
Len_g13278	No alias	pre-mRNA splicing factor *(SF1) & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g04206	No alias	pre-mRNA splicing factor *(SF1) & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g04920	No alias	pre-mRNA splicing factor *(SF1) & original description: none	0.04	OrthoFinder output from all 47 species
Lfl_g08487	No alias	pre-mRNA splicing factor *(SF1) & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g29785	No alias	pre-mRNA splicing factor *(SF1) & original description: none	0.06	OrthoFinder output from all 47 species
MA_15045g0010	No alias	pre-mRNA splicing factor (SF1)	0.04	OrthoFinder output from all 47 species
MA_160895g0010	No alias	pre-mRNA splicing factor (SF1)	0.04	OrthoFinder output from all 47 species
MA_8555g0010	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Mp7g15050.1	No alias	pre-mRNA splicing factor (SF1)	0.04	OrthoFinder output from all 47 species
Msp_g14137	No alias	pre-mRNA splicing factor *(SF1) & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g15293	No alias	pre-mRNA splicing factor *(SF1) & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g15402	No alias	pre-mRNA splicing factor *(SF1) & original description: none	0.04	OrthoFinder output from all 47 species
Nbi_g18845	No alias	pre-mRNA splicing factor *(SF1) & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g25454	No alias	pre-mRNA splicing factor *(SF1) & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g04834	No alias	pre-mRNA splicing factor *(SF1) & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g06586	No alias	pre-mRNA splicing factor *(SF1) & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g08596	No alias	pre-mRNA splicing factor *(SF1) & original description: none	0.07	OrthoFinder output from all 47 species
Ore_g16656	No alias	pre-mRNA splicing factor *(SF1) & original description: none	0.05	OrthoFinder output from all 47 species
Ore_g20482	No alias	pre-mRNA splicing factor *(SF1) & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g18388	No alias	pre-mRNA splicing factor *(SF1) & original description: none	0.06	OrthoFinder output from all 47 species
Pnu_g11449	No alias	pre-mRNA splicing factor *(SF1) & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g26612	No alias	pre-mRNA splicing factor *(SF1) & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g04689	No alias	pre-mRNA splicing factor *(SF1) & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0146.g023057	No alias	pre-mRNA splicing factor *(SF1) & original description:...	0.03	OrthoFinder output from all 47 species
Sam_g18592	No alias	pre-mRNA splicing factor *(SF1) & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g27159	No alias	pre-mRNA splicing factor *(SF1) & original description: none	0.04	OrthoFinder output from all 47 species
Smo73732	No alias	RNA processing.RNA splicing.U2-type-intron-specific...	0.03	OrthoFinder output from all 47 species
Smo77639	No alias	RNA processing.RNA splicing.U2-type-intron-specific...	0.03	OrthoFinder output from all 47 species
Solyc01g006010.3.1	Solyc01g006010	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Spa_g26555	No alias	pre-mRNA splicing factor *(SF1) & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g33095	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g09957	No alias	pre-mRNA splicing factor *(SF1) & original description: none	0.05	OrthoFinder output from all 47 species
Tin_g11604	No alias	pre-mRNA splicing factor *(SF1) & original description: none	0.04	OrthoFinder output from all 47 species
Tin_g14069	No alias	pre-mRNA splicing factor *(SF1) & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g45333	No alias	pre-mRNA splicing factor *(SF1) & original description: none	0.05	OrthoFinder output from all 47 species
Zm00001e008383_P001	Zm00001e008383	pre-mRNA splicing factor (SF1)	0.06	OrthoFinder output from all 47 species
Zm00001e040741_P001	Zm00001e040741	pre-mRNA splicing factor (SF1)	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	None	Extended
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	None	Extended
BP	GO:0000398	mRNA splicing, via spliceosome	RCA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	NAS	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	IEP	HCCA
BP	GO:0000910	cytokinesis	IEP	HCCA
BP	GO:0000911	cytokinesis by cell plate formation	IEP	HCCA
CC	GO:0000932	P-body	IEP	HCCA
BP	GO:0002376	immune system process	IEP	HCCA
BP	GO:0003006	developmental process involved in reproduction	IEP	HCCA
MF	GO:0003724	RNA helicase activity	IEP	HCCA
CC	GO:0005759	mitochondrial matrix	IEP	HCCA
CC	GO:0005829	cytosol	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006260	DNA replication	IEP	HCCA
BP	GO:0006304	DNA modification	IEP	HCCA
BP	GO:0006305	DNA alkylation	IEP	HCCA
BP	GO:0006306	DNA methylation	IEP	HCCA
BP	GO:0006310	DNA recombination	IEP	HCCA
BP	GO:0006312	mitotic recombination	IEP	HCCA
BP	GO:0006325	chromatin organization	IEP	HCCA
BP	GO:0006338	chromatin remodeling	IEP	HCCA
BP	GO:0006346	DNA methylation-dependent heterochromatin formation	IEP	HCCA
BP	GO:0006479	protein methylation	IEP	HCCA
BP	GO:0006955	immune response	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0007059	chromosome segregation	IEP	HCCA
BP	GO:0007062	sister chromatid cohesion	IEP	HCCA
BP	GO:0007275	multicellular organism development	IEP	HCCA
MF	GO:0008186	ATP-dependent activity, acting on RNA	IEP	HCCA
BP	GO:0008213	protein alkylation	IEP	HCCA
BP	GO:0009605	response to external stimulus	IEP	HCCA
BP	GO:0009606	tropism	IEP	HCCA
BP	GO:0009615	response to virus	IEP	HCCA
BP	GO:0009616	RNAi-mediated antiviral immune response	IEP	HCCA
BP	GO:0009628	response to abiotic stimulus	IEP	HCCA
BP	GO:0009629	response to gravity	IEP	HCCA
BP	GO:0009630	gravitropism	IEP	HCCA
BP	GO:0009790	embryo development	IEP	HCCA
BP	GO:0009793	embryo development ending in seed dormancy	IEP	HCCA
BP	GO:0009892	negative regulation of metabolic process	IEP	HCCA
BP	GO:0010165	response to X-ray	IEP	HCCA
BP	GO:0010468	regulation of gene expression	IEP	HCCA
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010608	post-transcriptional regulation of gene expression	IEP	HCCA
BP	GO:0010629	negative regulation of gene expression	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
BP	GO:0016441	post-transcriptional gene silencing	IEP	HCCA
CC	GO:0016514	SWI/SNF complex	IEP	HCCA
BP	GO:0016570	histone modification	IEP	HCCA
BP	GO:0016571	histone methylation	IEP	HCCA
BP	GO:0018022	peptidyl-lysine methylation	IEP	HCCA
BP	GO:0018193	peptidyl-amino acid modification	IEP	HCCA
BP	GO:0018205	peptidyl-lysine modification	IEP	HCCA
BP	GO:0019222	regulation of metabolic process	IEP	HCCA
BP	GO:0022402	cell cycle process	IEP	HCCA
BP	GO:0022414	reproductive process	IEP	HCCA
BP	GO:0030422	siRNA processing	IEP	HCCA
BP	GO:0031047	RNA-mediated gene silencing	IEP	HCCA
BP	GO:0031048	RNA-mediated heterochromatin formation	IEP	HCCA
BP	GO:0031507	heterochromatin formation	IEP	HCCA
CC	GO:0031974	membrane-enclosed lumen	IEP	HCCA
BP	GO:0032259	methylation	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034968	histone lysine methylation	IEP	HCCA
BP	GO:0035194	RNA-mediated post-transcriptional gene silencing	IEP	HCCA
CC	GO:0035770	ribonucleoprotein granule	IEP	HCCA
CC	GO:0036464	cytoplasmic ribonucleoprotein granule	IEP	HCCA
BP	GO:0040029	epigenetic regulation of gene expression	IEP	HCCA
CC	GO:0043233	organelle lumen	IEP	HCCA
BP	GO:0043414	macromolecule methylation	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
BP	GO:0044728	DNA methylation or demethylation	IEP	HCCA
BP	GO:0045087	innate immune response	IEP	HCCA
BP	GO:0045132	meiotic chromosome segregation	IEP	HCCA
BP	GO:0045814	negative regulation of gene expression, epigenetic	IEP	HCCA
BP	GO:0048193	Golgi vesicle transport	IEP	HCCA
BP	GO:0048519	negative regulation of biological process	IEP	HCCA
BP	GO:0050789	regulation of biological process	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
BP	GO:0051567	histone H3-K9 methylation	IEP	HCCA
BP	GO:0051607	defense response to virus	IEP	HCCA
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0061647	histone H3-K9 modification	IEP	HCCA
BP	GO:0065007	biological regulation	IEP	HCCA
CC	GO:0070013	intracellular organelle lumen	IEP	HCCA
CC	GO:0070603	SWI/SNF superfamily-type complex	IEP	HCCA
BP	GO:0070828	heterochromatin organization	IEP	HCCA
BP	GO:0070918	regulatory ncRNA processing	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:0080188	gene silencing by RNA-directed DNA methylation	IEP	HCCA
BP	GO:0098542	defense response to other organism	IEP	HCCA
BP	GO:0098813	nuclear chromosome segregation	IEP	HCCA
BP	GO:0140546	defense response to symbiont	IEP	HCCA
BP	GO:0140718	facultative heterochromatin formation	IEP	HCCA
BP	GO:1903046	meiotic cell cycle process	IEP	HCCA
CC	GO:1904949	ATPase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR004088	KH_dom_type_1	256	329
IPR000504	RRM_dom	482	551
IPR032570	SF1-HH	126	237

External Links

No external refs found!

AT5G51300

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation