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  5. AT5G48730

AT5G48730


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG0002119 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002119_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G48730

Target Alias Description ECC score Gene Family Method Actions
Ceric.1Z174800.1 Ceric.1Z174800 not classified & original description: pacid=50628243... 0.03 OrthoFinder output from all 47 species
Dcu_g02809 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01017677001 EMB2750 Pentatricopeptide repeat-containing protein At3g06430,... 0.04 OrthoFinder output from all 47 species
GSVIVT01028689001 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.07 OrthoFinder output from all 47 species
GSVIVT01032162001 No alias Pentatricopeptide repeat-containing protein At3g53170... 0.1 OrthoFinder output from all 47 species
Gb_36199 EMB2453, ATPPR5 Pentatricopeptide repeat-containing protein At4g39620,... 0.03 OrthoFinder output from all 47 species
Gb_37344 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.04 OrthoFinder output from all 47 species
LOC_Os03g02430.1 LOC_Os03g02430 Pentatricopeptide repeat-containing protein At3g53170... 0.05 OrthoFinder output from all 47 species
LOC_Os06g07550.1 LOC_Os06g07550 Pentatricopeptide repeat-containing protein At5g48730,... 0.05 OrthoFinder output from all 47 species
MA_12518g0010 EMB2453, ATPPR5 Pentatricopeptide repeat-containing protein PPR5... 0.03 OrthoFinder output from all 47 species
MA_793801g0010 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.03 OrthoFinder output from all 47 species
Msp_g27398 EMB2453, ATPPR5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g30371 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g11535 EMB2453, ATPPR5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0066.g016075 No alias not classified & original description: CDS=33-1412 0.03 OrthoFinder output from all 47 species
Sam_g13579 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g51172 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g006500.4.1 Solyc01g006500 Pentatricopeptide repeat-containing protein At5g48730,... 0.03 OrthoFinder output from all 47 species
Solyc01g057200.4.1 EMB2750, Solyc01g057200 Pentatricopeptide repeat-containing protein At3g06430,... 0.05 OrthoFinder output from all 47 species
Solyc04g054270.4.1 EMB2453, ATPPR5,... Pentatricopeptide repeat-containing protein PPR5... 0.05 OrthoFinder output from all 47 species
Solyc08g045780.4.1 Solyc08g045780 Pentatricopeptide repeat-containing protein At3g53170... 0.04 OrthoFinder output from all 47 species
Solyc12g098990.2.1 EMB2750, Solyc12g098990 Pentatricopeptide repeat-containing protein At3g06430,... 0.02 OrthoFinder output from all 47 species
Zm00001e023883_P001 EMB2453, ATPPR5,... Pentatricopeptide repeat-containing protein PPR5,... 0.04 OrthoFinder output from all 47 species
Zm00001e031052_P001 Zm00001e031052 Pentatricopeptide repeat-containing protein At5g48730,... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
BP GO:0000023 maltose metabolic process IEP HCCA
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004556 alpha-amylase activity IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0005982 starch metabolic process IEP HCCA
BP GO:0005984 disaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009536 plastid IEP HCCA
BP GO:0010021 amylopectin biosynthetic process IEP HCCA
MF GO:0016160 amylase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0019156 isoamylase activity IEP HCCA
BP GO:0019252 starch biosynthetic process IEP HCCA
BP GO:0019748 secondary metabolic process IEP HCCA
BP GO:0019757 glycosinolate metabolic process IEP HCCA
BP GO:0019758 glycosinolate biosynthetic process IEP HCCA
BP GO:0019760 glucosinolate metabolic process IEP HCCA
BP GO:0019761 glucosinolate biosynthetic process IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
BP GO:0043085 positive regulation of catalytic activity IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044093 positive regulation of molecular function IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
BP GO:0044272 sulfur compound biosynthetic process IEP HCCA
BP GO:0044550 secondary metabolite biosynthetic process IEP HCCA
BP GO:0048364 root development IEP HCCA
BP GO:0048367 shoot system development IEP HCCA
BP GO:0048731 system development IEP HCCA
BP GO:0050790 regulation of catalytic activity IEP HCCA
BP GO:0065009 regulation of molecular function IEP HCCA
BP GO:0099402 plant organ development IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:2000896 amylopectin metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 187 231
IPR002885 Pentatricopeptide_repeat 431 477
IPR002885 Pentatricopeptide_repeat 155 181
IPR002885 Pentatricopeptide_repeat 316 373
IPR002885 Pentatricopeptide_repeat 243 305
No external refs found!