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AT5G48655


Description : RING/U-box superfamily protein


Gene families : OG0001563 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001563_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G48655
Cluster HCCA: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
Aspi01Gene70441.t1 NLA, BAH1,... E3 ubiquitin ligase *(STUBL1/3) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.20G048500.1 RMA1, ATRMA1,... E3 ubiquitin ligase *(STUBL1/3) & original description:... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020563.180 OEP34, TOC34, ATTOC34 No description available 0.03 OrthoFinder output from all 47 species
Dcu_g08112 No alias E3 ubiquitin ligase *(STUBL1/3) & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os01g69040.1 LOC_Os01g69040 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Zm00001e034616_P002 Zm00001e034616 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
MF GO:0008270 zinc ion binding ISS Interproscan
BP GO:0010200 response to chitin IEP Interproscan
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Type GO Term Name Evidence Source
CC GO:0005811 lipid droplet IEP HCCA
BP GO:0019321 pentose metabolic process IEP HCCA
BP GO:0019915 lipid storage IEP HCCA
BP GO:0042732 D-xylose metabolic process IEP HCCA
BP GO:0051235 maintenance of location IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 147 186
No external refs found!