AT5G48170 (SLY2)

Aliases : SLY2

Description : F-box family protein

Gene families : OG0001049 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001049_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G48170
Cluster	HCCA: Cluster_124

Target	Alias	Description	ECC score	Gene Family Method
AT2G27310	No alias	F-box family protein	0.04	OrthoFinder output from all 47 species
Ala_g03585	No alias	substrate adaptor of SCF E3 ubiquitin ligase *(SLY) &...	0.03	OrthoFinder output from all 47 species
Aob_g20518	No alias	substrate adaptor of SCF E3 ubiquitin ligase *(SLY) &...	0.03	OrthoFinder output from all 47 species
Aspi01Gene24799.t1	Aspi01Gene24799	substrate adaptor of SCF E3 ubiquitin ligase *(SLY) &...	0.03	OrthoFinder output from all 47 species
MA_10432992g0010	SLY1	SLY-type gibberellin signal transducer. component F-box...	0.03	OrthoFinder output from all 47 species
Msp_g08673	No alias	substrate adaptor of SCF E3 ubiquitin ligase *(SLY) &...	0.02	OrthoFinder output from all 47 species
Pir_g64791	No alias	substrate adaptor of SCF E3 ubiquitin ligase *(SLY) &...	0.03	OrthoFinder output from all 47 species
Pnu_g12380	SLY1	substrate adaptor of SCF E3 ubiquitin ligase *(SLY) &...	0.02	OrthoFinder output from all 47 species
Zm00001e022823_P002	SLY1, Zm00001e022823	SLY-type gibberellin signal transducer. component F-box...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009740	gibberellic acid mediated signaling pathway	IMP	Interproscan
BP	GO:0009755	hormone-mediated signaling pathway	None	Extended
BP	GO:0009937	regulation of gibberellic acid mediated signaling pathway	IMP	Interproscan
BP	GO:0009966	regulation of signal transduction	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010476	gibberellin mediated signaling pathway	None	Extended
BP	GO:0010646	regulation of cell communication	None	Extended
CC	GO:0019005	SCF ubiquitin ligase complex	IPI	Interproscan
BP	GO:0023051	regulation of signaling	None	Extended
CC	GO:0031461	cullin-RING ubiquitin ligase complex	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048831	regulation of shoot system development	IGI	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1990234	transferase complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	HCCA
MF	GO:0004620	phospholipase activity	IEP	HCCA
MF	GO:0004702	obsolete signal transducer, downstream of receptor, with serine/threonine kinase activity	IEP	HCCA
MF	GO:0004806	triglyceride lipase activity	IEP	HCCA
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
CC	GO:0005811	lipid droplet	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0007389	pattern specification process	IEP	HCCA
MF	GO:0008265	Mo-molybdopterin cofactor sulfurase activity	IEP	HCCA
MF	GO:0008970	phospholipase A1 activity	IEP	HCCA
BP	GO:0009554	megasporogenesis	IEP	HCCA
BP	GO:0010058	regulation of atrichoblast fate specification	IEP	HCCA
BP	GO:0010059	positive regulation of atrichoblast fate specification	IEP	HCCA
BP	GO:0010061	regulation of trichoblast fate specification	IEP	HCCA
BP	GO:0010063	positive regulation of trichoblast fate specification	IEP	HCCA
BP	GO:0010071	root meristem specification	IEP	HCCA
BP	GO:0010305	leaf vascular tissue pattern formation	IEP	HCCA
BP	GO:0010453	regulation of cell fate commitment	IEP	HCCA
BP	GO:0010455	positive regulation of cell fate commitment	IEP	HCCA
BP	GO:0016143	S-glycoside metabolic process	IEP	HCCA
MF	GO:0016782	transferase activity, transferring sulphur-containing groups	IEP	HCCA
MF	GO:0016783	sulfurtransferase activity	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
BP	GO:0019827	stem cell population maintenance	IEP	HCCA
BP	GO:0030308	negative regulation of cell growth	IEP	HCCA
MF	GO:0034061	DNA polymerase activity	IEP	HCCA
BP	GO:0034293	sexual sporulation	IEP	HCCA
BP	GO:0042343	indole glucosinolate metabolic process	IEP	HCCA
BP	GO:0042659	regulation of cell fate specification	IEP	HCCA
BP	GO:0042660	positive regulation of cell fate specification	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
BP	GO:0043934	sporulation	IEP	HCCA
BP	GO:0045595	regulation of cell differentiation	IEP	HCCA
BP	GO:0045597	positive regulation of cell differentiation	IEP	HCCA
BP	GO:0045926	negative regulation of growth	IEP	HCCA
MF	GO:0047714	galactolipase activity	IEP	HCCA
BP	GO:0048236	plant-type sporogenesis	IEP	HCCA
BP	GO:0048367	shoot system development	IEP	HCCA
BP	GO:0048731	system development	IEP	HCCA
BP	GO:0051321	meiotic cell cycle	IEP	HCCA
BP	GO:0090421	embryonic meristem initiation	IEP	HCCA
BP	GO:0098727	maintenance of cell number	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
BP	GO:1901657	glycosyl compound metabolic process	IEP	HCCA
BP	GO:1903888	regulation of plant epidermal cell differentiation	IEP	HCCA
BP	GO:1903890	positive regulation of plant epidermal cell differentiation	IEP	HCCA
BP	GO:1905421	regulation of plant organ morphogenesis	IEP	HCCA
BP	GO:2000067	regulation of root morphogenesis	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001810	F-box_dom	33	73

External Links

No external refs found!

AT5G48170 (SLY2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation