AT5G46830 (NIG1, ATNIG1)

Aliases : NIG1, ATNIG1

Description : NACL-inducible gene 1

Gene families : OG0000245 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000245_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G46830

Target	Alias	Description	ECC score	Gene Family Method
Als_g08498	ATMYC2, MYC2,...	bHLH-type transcription factor & original description: none	0.06	OrthoFinder output from all 47 species
Als_g08499	ATMYC2, MYC2,...	bHLH-type transcription factor & original description: none	0.11	OrthoFinder output from all 47 species
Als_g37158	ATMYC2, MYC2,...	bHLH-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Ceric.24G046500.1	Ceric.24G046500	bHLH-type transcription factor & original description:...	0.05	OrthoFinder output from all 47 species
Gb_40760	BHLH42, TT8	transcription factor (bHLH)	0.05	OrthoFinder output from all 47 species
LOC_Os04g47080.1	EGL1, EGL3,...	transcription factor (bHLH)	0.02	OrthoFinder output from all 47 species
LOC_Os07g11020.1	BHLH42, TT8,...	Basic helix-loop-helix protein A OS=Pisum sativum...	0.02	OrthoFinder output from all 47 species
Len_g56958	No alias	not classified & original description: none	0.07	OrthoFinder output from all 47 species
Lfl_g19341	No alias	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0073.g017167	No alias	bHLH-type transcription factor & original description: CDS=1-1854	0.01	OrthoFinder output from all 47 species
Sam_g13834	No alias	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Solyc09g065100.3.1	BHLH42, TT8,...	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
Spa_g31120	ATMYC2, MYC2,...	bHLH-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e041498_P001	EGL1, EGL3,...	transcription factor (bHLH)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IDA	Interproscan
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	TAS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005509	calcium ion binding	IDA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006970	response to osmotic stress	None	Extended
BP	GO:0006972	hyperosmotic response	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009651	response to salt stress	IEP	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042538	hyperosmotic salinity response	IMP	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005773	vacuole	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
BP	GO:0009850	auxin metabolic process	IEP	HCCA
BP	GO:0010015	root morphogenesis	IEP	HCCA
BP	GO:0010038	response to metal ion	IEP	HCCA
BP	GO:0010101	post-embryonic root morphogenesis	IEP	HCCA
BP	GO:0010102	lateral root morphogenesis	IEP	HCCA
BP	GO:0010249	auxin conjugate metabolic process	IEP	HCCA
BP	GO:0010817	regulation of hormone levels	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
BP	GO:0016556	mRNA modification	IEP	HCCA
BP	GO:0042445	hormone metabolic process	IEP	HCCA
BP	GO:0048364	root development	IEP	HCCA
BP	GO:0065008	regulation of biological quality	IEP	HCCA
BP	GO:0090697	post-embryonic plant organ morphogenesis	IEP	HCCA
BP	GO:0090698	post-embryonic plant morphogenesis	IEP	HCCA
BP	GO:0099402	plant organ development	IEP	HCCA
BP	GO:1905392	plant organ morphogenesis	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR025610	MYC/MYB_N	35	225
IPR011598	bHLH_dom	343	388

External Links

No external refs found!

AT5G46830 (NIG1, ATNIG1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation