1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. AT5G40480

AT5G40480 (EMB3012)


Aliases : EMB3012

Description : embryo defective 3012


Gene families : OG0005031 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005031_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G40480
Cluster HCCA: Cluster_65

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00191680 EMB3012,... Protein translocation.nucleus.nucleocytoplasmic... 0.05 OrthoFinder output from all 47 species
Ala_g04222 EMB3012 nucleoporin of nuclear pore complex *(GP210) & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0308.g064042 EMB3012 nucleoporin of nuclear pore complex *(GP210) & original... 0.03 OrthoFinder output from all 47 species
Ceric.03G060200.1 EMB3012, Ceric.03G060200 nucleoporin of nuclear pore complex *(GP210) & original... 0.1 OrthoFinder output from all 47 species
Ceric.03G060400.1 EMB3012, Ceric.03G060400 nucleoporin of nuclear pore complex *(GP210) & original... 0.08 OrthoFinder output from all 47 species
Dcu_g19243 EMB3012 nucleoporin of nuclear pore complex *(GP210) & original... 0.08 OrthoFinder output from all 47 species
GSVIVT01032403001 EMB3012 Protein translocation.nucleus.nucleocytoplasmic... 0.14 OrthoFinder output from all 47 species
Gb_06166 EMB3012 Nuclear pore complex protein GP210 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Len_g30750 EMB3012 nucleoporin of nuclear pore complex *(GP210) & original... 0.02 OrthoFinder output from all 47 species
MA_10432657g0010 EMB3012 GP210 nucleoporin of nuclear pore complex 0.04 OrthoFinder output from all 47 species
MA_53554g0010 EMB3012 GP210 nucleoporin of nuclear pore complex 0.07 OrthoFinder output from all 47 species
Mp1g06580.1 EMB3012 GP210 nucleoporin of nuclear pore complex 0.07 OrthoFinder output from all 47 species
Ore_g06265 EMB3012 nucleoporin of nuclear pore complex *(GP210) & original... 0.02 OrthoFinder output from all 47 species
Pir_g33707 EMB3012 nucleoporin of nuclear pore complex *(GP210) & original... 0.03 OrthoFinder output from all 47 species
Ppi_g09499 EMB3012 nucleoporin of nuclear pore complex *(GP210) & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0093.g019101 EMB3012 nucleoporin of nuclear pore complex *(GP210) & original... 0.03 OrthoFinder output from all 47 species
Sam_g27879 No alias nucleoporin of nuclear pore complex *(GP210) & original... 0.03 OrthoFinder output from all 47 species
Smo99561 EMB3012 Protein translocation.nucleus.nucleocytoplasmic... 0.02 OrthoFinder output from all 47 species
Solyc02g070810.4.1 EMB3012, Solyc02g070810 GP210 nucleoporin of nuclear pore complex 0.1 OrthoFinder output from all 47 species
Zm00001e009488_P002 EMB3012, Zm00001e009488 GP210 nucleoporin of nuclear pore complex 0.11 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IPI Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005635 nuclear envelope IDA Interproscan
CC GO:0005783 endoplasmic reticulum IDA Interproscan
BP GO:0009793 embryo development ending in seed dormancy NAS Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000003 reproduction IEP HCCA
BP GO:0000723 telomere maintenance IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0003730 mRNA 3'-UTR binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
CC GO:0005829 cytosol IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006275 regulation of DNA replication IEP HCCA
BP GO:0006278 RNA-templated DNA biosynthetic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006312 mitotic recombination IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006378 mRNA polyadenylation IEP HCCA
BP GO:0006379 mRNA cleavage IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006405 RNA export from nucleus IEP HCCA
BP GO:0006406 mRNA export from nucleus IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0007004 telomere maintenance via telomerase IEP HCCA
BP GO:0007059 chromosome segregation IEP HCCA
BP GO:0007062 sister chromatid cohesion IEP HCCA
BP GO:0007129 homologous chromosome pairing at meiosis IEP HCCA
BP GO:0007131 reciprocal meiotic recombination IEP HCCA
BP GO:0007276 gamete generation IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0008156 negative regulation of DNA replication IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0009553 embryo sac development IEP HCCA
BP GO:0009560 embryo sac egg cell differentiation IEP HCCA
BP GO:0009846 pollen germination IEP HCCA
BP GO:0009880 embryonic pattern specification IEP HCCA
BP GO:0009909 regulation of flower development IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010044 response to aluminum ion IEP HCCA
BP GO:0010072 primary shoot apical meristem specification IEP HCCA
BP GO:0010074 maintenance of meristem identity IEP HCCA
BP GO:0010252 auxin homeostasis IEP HCCA
BP GO:0010431 seed maturation IEP HCCA
BP GO:0010564 regulation of cell cycle process IEP HCCA
BP GO:0010833 telomere maintenance via telomere lengthening IEP HCCA
BP GO:0010948 negative regulation of cell cycle process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0015931 nucleobase-containing compound transport IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016569 obsolete covalent chromatin modification IEP HCCA
BP GO:0016570 histone modification IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019827 stem cell population maintenance IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0022412 cellular process involved in reproduction in multicellular organism IEP HCCA
BP GO:0030154 cell differentiation IEP HCCA
BP GO:0031123 RNA 3'-end processing IEP HCCA
BP GO:0031124 mRNA 3'-end processing IEP HCCA
CC GO:0031965 nuclear membrane IEP HCCA
BP GO:0032200 telomere organization IEP HCCA
BP GO:0032204 regulation of telomere maintenance IEP HCCA
BP GO:0032504 multicellular organism reproduction IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0032875 regulation of DNA endoreduplication IEP HCCA
BP GO:0032876 negative regulation of DNA endoreduplication IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0035825 homologous recombination IEP HCCA
BP GO:0042138 meiotic DNA double-strand break formation IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043247 telomere maintenance in response to DNA damage IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043631 RNA polyadenylation IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0045132 meiotic chromosome segregation IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0045595 regulation of cell differentiation IEP HCCA
BP GO:0045786 negative regulation of cell cycle IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048229 gametophyte development IEP HCCA
BP GO:0048449 floral organ formation IEP HCCA
BP GO:0048481 plant ovule development IEP HCCA
BP GO:0048580 regulation of post-embryonic development IEP HCCA
BP GO:0048609 multicellular organismal reproductive process IEP HCCA
BP GO:0048646 anatomical structure formation involved in morphogenesis IEP HCCA
BP GO:0048831 regulation of shoot system development IEP HCCA
BP GO:0048869 cellular developmental process IEP HCCA
BP GO:0050657 nucleic acid transport IEP HCCA
BP GO:0050658 RNA transport IEP HCCA
BP GO:0050793 regulation of developmental process IEP HCCA
BP GO:0051028 mRNA transport IEP HCCA
BP GO:0051052 regulation of DNA metabolic process IEP HCCA
BP GO:0051053 negative regulation of DNA metabolic process IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
BP GO:0051168 nuclear export IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
BP GO:0051236 establishment of RNA localization IEP HCCA
BP GO:0051239 regulation of multicellular organismal process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051302 regulation of cell division IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
BP GO:0061982 meiosis I cell cycle process IEP HCCA
BP GO:0070192 chromosome organization involved in meiotic cell cycle IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0071897 DNA biosynthetic process IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP HCCA
BP GO:0090329 regulation of DNA-templated DNA replication IEP HCCA
BP GO:0090421 embryonic meristem initiation IEP HCCA
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
BP GO:0098727 maintenance of cell number IEP HCCA
BP GO:0098813 nuclear chromosome segregation IEP HCCA
BP GO:0099402 plant organ development IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
BP GO:0140527 reciprocal homologous recombination IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1903046 meiotic cell cycle process IEP HCCA
BP GO:1905393 plant organ formation IEP HCCA
BP GO:2000026 regulation of multicellular organismal development IEP HCCA
BP GO:2000104 negative regulation of DNA-templated DNA replication IEP HCCA
BP GO:2000241 regulation of reproductive process IEP HCCA

No InterPro domains available for this sequence

No external refs found!