LOC_Os01g15860 (Os01g0263600)


Aliases : Os01g0263600

Description : 27.1.1 RNA.processing.splicing Encodes a nuclear protein similar to the human U5 small ribonucleoprotein-associated 102-kD protein and to the yeast pre-mRNA splicing factors Prp1p and Prp6p. STA1 expression is upregulated by cold stress, and the sta1-1 mutant is defective in the splicing of the cold-induced COR15A gene. Luciferase imaging was used to isolate a recessive mutant, sta1-1, with enhanced stability of the normally unstable luciferase transcript. This mutation also causes the stabilization of some endogenous gene transcripts and has a range of developmental and stress response phenotypes. EMBRYO DEFECTIVE 2770 (EMB2770)


Gene families : OG_01_0003746 (Gene family) Phylogenetic Tree(s): OG0003746_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): LOC_Os01g15860
Cluster HCCA cluster: Cluster_61

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000880.19 No alias 27.1.1 RNA.processing.splicing Encodes a nuclear protein... 0.02 Gene family
Cre14.g633650 No alias 27.1.1 RNA.processing.splicing Encodes a nuclear protein... 0.01 Gene family
Solyc07g054200.3.1 Solyc07g054200.3 27.1.1 RNA.processing.splicing Encodes a nuclear protein... 0.01 Gene family
Zm00001d041703 GRMZM2G049902 27.1.1 RNA.processing.splicing Encodes a nuclear protein... 0.02 Gene family

Type GO Term Name Evidence Source
BP GO:0000398 mRNA splicing, via spliceosome IEA InterProScan
CC GO:0005634 nucleus IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR010491 PRP1_N 33 182
No external refs found!