AT5G23900

Description : Ribosomal protein L13e family protein

Gene families : OG0000911 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000911_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G23900

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00022p00239970	BBC1, RSU2,...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.13	OrthoFinder output from all 47 species
AMTR_s00029p00111280	BBC1, RSU2,...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	OrthoFinder output from all 47 species
Adi_g014302	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Adi_g014304	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Adi_g124336	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Aev_g05088	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Ala_g07445	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Ala_g38739	No alias	component *(eL13) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
Als_g02247	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Als_g19346	No alias	component *(eL13) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Als_g21602	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Als_g24759	No alias	component *(eL13) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Aob_g02822	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Aop_g01579	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.14	OrthoFinder output from all 47 species
Aop_g02719	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.14	OrthoFinder output from all 47 species
Aspi01Gene19487.t1	BBC1, RSU2,...	component *(eL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Azfi_s0002.g001387	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Azfi_s0050.g031133	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Azfi_s3078.g114481	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Cba_g28227	No alias	component *(eL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Cba_g65571	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ceric.06G067700.1	BBC1, RSU2,...	component *(eL13) of large ribosomal-subunit (LSU)...	0.11	OrthoFinder output from all 47 species
Ceric.21G071200.1	BBC1, RSU2,...	component *(eL13) of large ribosomal-subunit (LSU)...	0.21	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020629.36	BBC1, RSU2, ATBBC1	Protein biosynthesis.cytosolic ribosome.large subunit...	0.13	OrthoFinder output from all 47 species
Cre14.g630100	BBC1, RSU2, ATBBC1	Protein biosynthesis.cytosolic ribosome.large subunit...	0.08	OrthoFinder output from all 47 species
Dac_g06660	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Dac_g15740	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.11	OrthoFinder output from all 47 species
Dac_g26993	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Dcu_g00643	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Dcu_g26018	No alias	component *(eL13) of large ribosomal-subunit (LSU)...	0.11	OrthoFinder output from all 47 species
Dde_g13576	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ehy_g04408	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
GSVIVT01027212001	BBC1, RSU2, ATBBC1	Protein biosynthesis.cytosolic ribosome.large subunit...	0.25	OrthoFinder output from all 47 species
GSVIVT01030767001	BBC1, RSU2, ATBBC1	Protein biosynthesis.cytosolic ribosome.large subunit...	0.18	OrthoFinder output from all 47 species
LOC_Os03g37970.1	BBC1, RSU2,...	component RPL13 of LSU proteome component	0.1	OrthoFinder output from all 47 species
LOC_Os06g02510.2	BBC1, RSU2,...	component RPL13 of LSU proteome component	0.22	OrthoFinder output from all 47 species
Len_g00988	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Lfl_g00576	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Lfl_g31949	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
MA_10430790g0030	BBC1, RSU2, ATBBC1	component RPL13 of LSU proteome component	0.03	OrthoFinder output from all 47 species
Mp1g04920.1	BBC1, RSU2, ATBBC1	component RPL13 of LSU proteome component	0.24	OrthoFinder output from all 47 species
Mp2g19790.1	BBC1, RSU2, ATBBC1	component RPL13 of LSU proteome component	0.21	OrthoFinder output from all 47 species
Msp_g00929	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.13	OrthoFinder output from all 47 species
Nbi_g00314	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ore_g11184	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Pir_g04222	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Pir_g17440	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Pp3c1_26280V3.1	BBC1, RSU2,...	breast basic conserved 1	0.12	OrthoFinder output from all 47 species
Ppi_g19558	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000099	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.11	OrthoFinder output from all 47 species
Sacu_v1.1_s0172.g024435	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Sam_g20834	No alias	component *(eL13) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Sam_g23043	No alias	component *(eL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g40236	No alias	component *(eL13) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Sam_g43982	No alias	component *(eL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Smo165483	BBC1, RSU2, ATBBC1	Protein biosynthesis.cytosolic ribosome.large subunit...	0.05	OrthoFinder output from all 47 species
Smo266648	BBC1, RSU2, ATBBC1	Protein biosynthesis.cytosolic ribosome.large subunit...	0.1	OrthoFinder output from all 47 species
Solyc08g075700.3.1	BBC1, RSU2,...	component RPL13 of LSU proteome component	0.29	OrthoFinder output from all 47 species
Solyc12g096150.2.1	BBC1, RSU2,...	component RPL13 of LSU proteome component	0.23	OrthoFinder output from all 47 species
Spa_g05295	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.1	OrthoFinder output from all 47 species
Spa_g14938	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.11	OrthoFinder output from all 47 species
Spa_g24037	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.11	OrthoFinder output from all 47 species
Spa_g43259	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Tin_g01593	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Tin_g03031	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Zm00001e018804_P001	BBC1, RSU2,...	component RPL13 of LSU proteome component	0.19	OrthoFinder output from all 47 species
Zm00001e028430_P003	BBC1, RSU2,...	component RPL13 of LSU proteome component	0.17	OrthoFinder output from all 47 species
Zm00001e031172_P001	BBC1, RSU2,...	component RPL13 of LSU proteome component	0.07	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	ISS	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005840	ribosome	ISS	Interproscan
BP	GO:0006412	translation	ISS	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0015934	large ribosomal subunit	None	Extended
CC	GO:0016020	membrane	IDA	Interproscan
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0022613	ribonucleoprotein complex biogenesis	None	Extended
CC	GO:0022625	cytosolic large ribosomal subunit	IDA	Interproscan
CC	GO:0022626	cytosolic ribosome	IDA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0042254	ribosome biogenesis	ISS	Interproscan
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044085	cellular component biogenesis	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005829	cytosol	IEP	HCCA
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006220	pyrimidine nucleotide metabolic process	IEP	HCCA
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009218	pyrimidine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009220	pyrimidine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0010014	meristem initiation	IEP	HCCA
BP	GO:0010252	auxin homeostasis	IEP	HCCA
CC	GO:0015935	small ribosomal subunit	IEP	HCCA
BP	GO:0022603	regulation of anatomical structure morphogenesis	IEP	HCCA
CC	GO:0022627	cytosolic small ribosomal subunit	IEP	HCCA
BP	GO:0042592	homeostatic process	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
BP	GO:0048878	chemical homeostasis	IEP	HCCA
BP	GO:0060688	regulation of morphogenesis of a branching structure	IEP	HCCA
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	HCCA
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0090506	axillary shoot meristem initiation	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA
BP	GO:1905428	regulation of plant organ formation	IEP	HCCA
BP	GO:2000032	regulation of secondary shoot formation	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001380	Ribosomal_L13e	6	184

External Links

No external refs found!

AT5G23900

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation