AT5G23420 (HMGB6)

Aliases : HMGB6

Description : high-mobility group box 6

Gene families : OG0000118 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000118_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G23420
Cluster	HCCA: Cluster_85

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00171p00070550	HMGB6,...	High mobility group B protein 7 OS=Arabidopsis thaliana	0.11	OrthoFinder output from all 47 species
Adi_g007317	NFD2, HMG BETA...	DNA bending architectural protein *(HMG-B) & original...	0.06	OrthoFinder output from all 47 species
Adi_g012117	NFD03, HMGB3, NFD3	DNA bending architectural protein *(HMG-B) & original...	0.05	OrthoFinder output from all 47 species
Adi_g018094	NFD03, HMGB3, NFD3	DNA bending architectural protein *(HMG-B) & original...	0.06	OrthoFinder output from all 47 species
Adi_g080941	NFD2, HMG BETA...	DNA bending architectural protein *(HMG-B) & original...	0.03	OrthoFinder output from all 47 species
Adi_g080942	NFD2, HMG BETA...	DNA bending architectural protein *(HMG-B) & original...	0.03	OrthoFinder output from all 47 species
Adi_g124291	NFD03, HMGB3, NFD3	DNA bending architectural protein *(HMG-B) & original...	0.04	OrthoFinder output from all 47 species
Ala_g04363	NFD03, HMGB3, NFD3	DNA bending architectural protein *(HMG-B) & original...	0.05	OrthoFinder output from all 47 species
Ala_g24042	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g10080	NFD03, HMGB3, NFD3	DNA bending architectural protein *(HMG-B) & original...	0.02	OrthoFinder output from all 47 species
Als_g13137	NFD2, HMG BETA...	DNA bending architectural protein *(HMG-B) & original...	0.05	OrthoFinder output from all 47 species
Als_g26560	NFD03, HMGB3, NFD3	DNA bending architectural protein *(HMG-B) & original...	0.02	OrthoFinder output from all 47 species
Als_g44054	NFD03, HMGB3, NFD3	DNA bending architectural protein *(HMG-B) & original...	0.03	OrthoFinder output from all 47 species
Aop_g06071	NFD03, HMGB3, NFD3	DNA bending architectural protein *(HMG-B) & original...	0.02	OrthoFinder output from all 47 species
Aop_g23124	NFD2, HMG BETA...	DNA bending architectural protein *(HMG-B) & original...	0.09	OrthoFinder output from all 47 species
Aop_g38218	HMGB6	DNA bending architectural protein *(HMG-B) & original...	0.1	OrthoFinder output from all 47 species
Aop_g48668	NFD03, HMGB3, NFD3	DNA bending architectural protein *(HMG-B) & original...	0.09	OrthoFinder output from all 47 species
Aspi01Gene12485.t1	NFD03, HMGB3,...	DNA bending architectural protein *(HMG-B) & original...	0.03	OrthoFinder output from all 47 species
Aspi01Gene33539.t1	NFD03, HMGB3,...	DNA bending architectural protein *(HMG-B) & original...	0.03	OrthoFinder output from all 47 species
Azfi_s0132.g049182	NFD2, HMG BETA...	not classified & original description: CDS=249-659	0.03	OrthoFinder output from all 47 species
Ceric.03G026600.1	HMGB6, Ceric.03G026600	DNA bending architectural protein *(HMG-B) & original...	0.13	OrthoFinder output from all 47 species
Ceric.23G068700.1	NFD2, HMG BETA...	DNA bending architectural protein *(HMG-B) & original...	0.05	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000663.58	ATHMG, HMG, SSRP1, NFD	No description available	0.03	OrthoFinder output from all 47 species
Cre06.g261450	ATHMG, HMG, SSRP1, NFD	No description available	0.04	OrthoFinder output from all 47 species
Cre16.g672300	No alias	No description available	0.02	OrthoFinder output from all 47 species
Dac_g07597	HMGB6	DNA bending architectural protein *(HMG-B) & original...	0.06	OrthoFinder output from all 47 species
Dac_g07598	HMGB6	DNA bending architectural protein *(HMG-B) & original...	0.11	OrthoFinder output from all 47 species
Dac_g12415	NFD03, HMGB3, NFD3	DNA bending architectural protein *(HMG-B) & original...	0.08	OrthoFinder output from all 47 species
Dac_g19456	NFD03, HMGB3, NFD3	DNA bending architectural protein *(HMG-B) & original...	0.06	OrthoFinder output from all 47 species
Dac_g20756	NFD2, HMG BETA...	DNA bending architectural protein *(HMG-B) & original...	0.1	OrthoFinder output from all 47 species
Dac_g44453	NFD2, HMG BETA...	DNA bending architectural protein *(HMG-B) & original...	0.07	OrthoFinder output from all 47 species
Dde_g39139	NFD03, HMGB3, NFD3	DNA bending architectural protein *(HMG-B) & original...	0.02	OrthoFinder output from all 47 species
GSVIVT01034361001	HMGB6	High mobility group B protein 7 OS=Arabidopsis thaliana	0.13	OrthoFinder output from all 47 species
Gb_00374	No alias	High mobility group B protein 6 OS=Arabidopsis thaliana...	0.1	OrthoFinder output from all 47 species
Gb_05796	NFD2, HMG BETA...	High mobility group B protein 1 OS=Arabidopsis thaliana...	0.06	OrthoFinder output from all 47 species
Gb_32435	HMGB6	High mobility group B protein 7 OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
Gb_34784	HMGB6	High mobility group B protein 7 OS=Arabidopsis thaliana...	0.15	OrthoFinder output from all 47 species
LOC_Os02g15810.1	LOC_Os02g15810	High mobility group B protein 13 OS=Arabidopsis thaliana...	0.04	OrthoFinder output from all 47 species
LOC_Os08g01100.1	HMGB6, LOC_Os08g01100	High mobility group B protein 7 OS=Arabidopsis thaliana...	0.09	OrthoFinder output from all 47 species
LOC_Os09g37910.1	NFD2, HMG BETA...	HMG1/2-like protein OS=Ipomoea nil (sp\|p40619\|hmgl_iponi : 99.4)	0.03	OrthoFinder output from all 47 species
Len_g04502	NFD03, HMGB3, NFD3	DNA bending architectural protein *(HMG-B) & original...	0.06	OrthoFinder output from all 47 species
Len_g16826	NFD03, HMGB3, NFD3	DNA bending architectural protein *(HMG-B) & original...	0.06	OrthoFinder output from all 47 species
Len_g21317	NFD2, HMG BETA...	DNA bending architectural protein *(HMG-B) & original...	0.06	OrthoFinder output from all 47 species
Len_g30940	HMGB6	DNA bending architectural protein *(HMG-B) & original...	0.08	OrthoFinder output from all 47 species
Lfl_g24536	HMGB6	DNA bending architectural protein *(HMG-B) & original...	0.06	OrthoFinder output from all 47 species
MA_72555g0010	NFD2, HMG BETA...	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
MA_783123g0010	No alias	High mobility group B protein 6 OS=Arabidopsis thaliana...	0.04	OrthoFinder output from all 47 species
MA_86565g0010	HMGB6	no hits & (original description: none)	0.1	OrthoFinder output from all 47 species
Mp2g12330.1	No alias	High mobility group B protein 6 OS=Arabidopsis thaliana...	0.08	OrthoFinder output from all 47 species
Msp_g01263	NFD03, HMGB3, NFD3	DNA bending architectural protein *(HMG-B) & original...	0.07	OrthoFinder output from all 47 species
Msp_g38531	HMGB6	DNA bending architectural protein *(HMG-B) & original...	0.07	OrthoFinder output from all 47 species
Nbi_g06088	HMGB6	DNA bending architectural protein *(HMG-B) & original...	0.08	OrthoFinder output from all 47 species
Nbi_g12748	NFD03, HMGB3, NFD3	DNA bending architectural protein *(HMG-B) & original...	0.06	OrthoFinder output from all 47 species
Nbi_g22023	NFD4, HMGB4, NFD04	DNA bending architectural protein *(HMG-B) & original...	0.05	OrthoFinder output from all 47 species
Ppi_g04305	NFD1, HMGB1	DNA bending architectural protein *(HMG-B) & original...	0.03	OrthoFinder output from all 47 species
Sam_g17368	No alias	DNA bending architectural protein *(HMG-B) & original...	0.05	OrthoFinder output from all 47 species
Sam_g27294	No alias	DNA bending architectural protein *(HMG-B) & original...	0.06	OrthoFinder output from all 47 species
Sam_g31468	No alias	DNA bending architectural protein *(HMG-B) & original...	0.04	OrthoFinder output from all 47 species
Sam_g36464	No alias	DNA bending architectural protein *(HMG-B) & original...	0.05	OrthoFinder output from all 47 species
Sam_g40555	No alias	DNA bending architectural protein *(HMG-B) & original...	0.05	OrthoFinder output from all 47 species
Smo73858	No alias	High mobility group B protein 6 OS=Arabidopsis thaliana	0.05	OrthoFinder output from all 47 species
Solyc04g008820.3.1	HMGB6, Solyc04g008820	High mobility group B protein 7 OS=Arabidopsis thaliana...	0.15	OrthoFinder output from all 47 species
Solyc08g082070.3.1	Solyc08g082070	High mobility group B protein 6 OS=Arabidopsis thaliana...	0.04	OrthoFinder output from all 47 species
Spa_g04270	NFD2, HMG BETA...	DNA bending architectural protein *(HMG-B) & original...	0.06	OrthoFinder output from all 47 species
Spa_g10432	HMGB6	DNA bending architectural protein *(HMG-B) & original...	0.1	OrthoFinder output from all 47 species
Spa_g15059	NFD2, HMG BETA...	DNA bending architectural protein *(HMG-B) & original...	0.07	OrthoFinder output from all 47 species
Tin_g00083	NFD03, HMGB3, NFD3	DNA bending architectural protein *(HMG-B) & original...	0.13	OrthoFinder output from all 47 species
Tin_g03032	HMGB6	DNA bending architectural protein *(HMG-B) & original...	0.1	OrthoFinder output from all 47 species
Tin_g45467	NFD2, HMG BETA...	DNA bending architectural protein *(HMG-B) & original...	0.14	OrthoFinder output from all 47 species
Zm00001e024274_P002	HMGB6, Zm00001e024274	High mobility group B protein 7 OS=Arabidopsis thaliana...	0.07	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IDA	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006260	DNA replication	None	Extended
BP	GO:0006261	DNA-templated DNA replication	RCA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
BP	GO:0000724	double-strand break repair via homologous recombination	IEP	HCCA
BP	GO:0000725	recombinational repair	IEP	HCCA
BP	GO:0000910	cytokinesis	IEP	HCCA
BP	GO:0000911	cytokinesis by cell plate formation	IEP	HCCA
MF	GO:0004748	ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
CC	GO:0005971	ribonucleoside-diphosphate reductase complex	IEP	HCCA
BP	GO:0006268	DNA unwinding involved in DNA replication	IEP	HCCA
BP	GO:0006270	DNA replication initiation	IEP	HCCA
BP	GO:0006275	regulation of DNA replication	IEP	HCCA
BP	GO:0006302	double-strand break repair	IEP	HCCA
BP	GO:0006304	DNA modification	IEP	HCCA
BP	GO:0006305	DNA alkylation	IEP	HCCA
BP	GO:0006306	DNA methylation	IEP	HCCA
BP	GO:0006310	DNA recombination	IEP	HCCA
BP	GO:0006479	protein methylation	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0007129	homologous chromosome pairing at meiosis	IEP	HCCA
BP	GO:0007131	reciprocal meiotic recombination	IEP	HCCA
BP	GO:0007166	cell surface receptor signaling pathway	IEP	HCCA
BP	GO:0007167	enzyme-linked receptor protein signaling pathway	IEP	HCCA
BP	GO:0007169	transmembrane receptor protein tyrosine kinase signaling pathway	IEP	HCCA
BP	GO:0007346	regulation of mitotic cell cycle	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
BP	GO:0008213	protein alkylation	IEP	HCCA
BP	GO:0008283	cell population proliferation	IEP	HCCA
BP	GO:0009142	nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009200	deoxyribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009202	deoxyribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009560	embryo sac egg cell differentiation	IEP	HCCA
BP	GO:0010389	regulation of G2/M transition of mitotic cell cycle	IEP	HCCA
BP	GO:0010564	regulation of cell cycle process	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
MF	GO:0016538	cyclin-dependent protein serine/threonine kinase regulator activity	IEP	HCCA
BP	GO:0016570	histone modification	IEP	HCCA
BP	GO:0016571	histone methylation	IEP	HCCA
MF	GO:0016725	oxidoreductase activity, acting on CH or CH2 groups	IEP	HCCA
MF	GO:0016728	oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
BP	GO:0018022	peptidyl-lysine methylation	IEP	HCCA
BP	GO:0018193	peptidyl-amino acid modification	IEP	HCCA
BP	GO:0018205	peptidyl-lysine modification	IEP	HCCA
MF	GO:0019207	kinase regulator activity	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
MF	GO:0019887	protein kinase regulator activity	IEP	HCCA
BP	GO:0022402	cell cycle process	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
BP	GO:0032259	methylation	IEP	HCCA
BP	GO:0032392	DNA geometric change	IEP	HCCA
BP	GO:0032508	DNA duplex unwinding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0034968	histone lysine methylation	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
BP	GO:0035825	homologous recombination	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0043414	macromolecule methylation	IEP	HCCA
BP	GO:0044728	DNA methylation or demethylation	IEP	HCCA
BP	GO:0050789	regulation of biological process	IEP	HCCA
BP	GO:0050794	regulation of cellular process	IEP	HCCA
BP	GO:0051052	regulation of DNA metabolic process	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
BP	GO:0051567	histone H3-K9 methylation	IEP	HCCA
BP	GO:0051726	regulation of cell cycle	IEP	HCCA
BP	GO:0061647	histone H3-K9 modification	IEP	HCCA
MF	GO:0061731	ribonucleoside-diphosphate reductase activity	IEP	HCCA
BP	GO:0065007	biological regulation	IEP	HCCA
BP	GO:0070192	chromosome organization involved in meiotic cell cycle	IEP	HCCA
BP	GO:0071103	DNA conformation change	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
CC	GO:0080008	Cul4-RING E3 ubiquitin ligase complex	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
BP	GO:0140527	reciprocal homologous recombination	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
BP	GO:1901564	organonitrogen compound metabolic process	IEP	HCCA
BP	GO:1901987	regulation of cell cycle phase transition	IEP	HCCA
BP	GO:1901990	regulation of mitotic cell cycle phase transition	IEP	HCCA
CC	GO:1902494	catalytic complex	IEP	HCCA
BP	GO:1902749	regulation of cell cycle G2/M phase transition	IEP	HCCA
CC	GO:1990204	oxidoreductase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR009071	HMG_box_dom	115	179

External Links

No external refs found!

AT5G23420 (HMGB6)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation