AT5G17300 (RVE1)

Aliases : RVE1

Description : Homeodomain-like superfamily protein

Gene families : OG0000435 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000435_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G17300

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00272270	LHY1, LHY,...	Multi-process regulation.circadian clock.core oscillator...	0.1	OrthoFinder output from all 47 species
AMTR_s00044p00072910	RVE2, CIR1,...	RNA biosynthesis.transcriptional activation.MYB...	0.08	OrthoFinder output from all 47 species
Adi_g007041	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g15171	RVE1	circadian clock core oscillator protein *(LHY/CCA1) &...	0.04	OrthoFinder output from all 47 species
Aob_g01863	No alias	circadian clock factor *(REVEILLE) & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g33458	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene01893.t1	Aspi01Gene01893	transcription factor *(REVEILLE) & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene31231.t1	RVE2, CIR1,...	transcription factor *(REVEILLE) & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene31232.t1	LHY1, LHY,...	circadian clock core oscillator protein *(LHY/CCA1) &...	0.02	OrthoFinder output from all 47 species
Aspi01Gene31403.t1	RVE1, Aspi01Gene31403	transcription factor *(REVEILLE) & original description: none	0.04	OrthoFinder output from all 47 species
Azfi_s0001.g000277	No alias	circadian clock factor *(REVEILLE) & original...	0.06	OrthoFinder output from all 47 species
Azfi_s0005.g008971	RVE1	transcription factor *(REVEILLE) & original description:...	0.03	OrthoFinder output from all 47 species
Azfi_s0042.g026930	CCA1	circadian clock core oscillator protein *(LHY/CCA1) &...	0.03	OrthoFinder output from all 47 species
Ceric.04G087900.1	RVE2, CIR1,...	transcription factor *(REVEILLE) & original description:...	0.05	OrthoFinder output from all 47 species
Ceric.07G057200.1	RVE1, Ceric.07G057200	transcription factor *(REVEILLE) & original description:...	0.04	OrthoFinder output from all 47 species
Cre06.g275350	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.04	OrthoFinder output from all 47 species
Dac_g06441	No alias	transcription factor *(REVEILLE) & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01027456001	CCA1	Multi-process regulation.circadian clock.core oscillator...	0.07	OrthoFinder output from all 47 species
GSVIVT01035231001	RVE1	RNA biosynthesis.transcriptional activation.MYB...	0.1	OrthoFinder output from all 47 species
Gb_25658	RVE1	transcription factor (MYB-related). circadian clock core...	0.07	OrthoFinder output from all 47 species
Gb_28874	LHY1, LHY	transcription factor (MYB-related). circadian clock core...	0.04	OrthoFinder output from all 47 species
LOC_Os06g01670.1	LOC_Os06g01670	transcription factor (MYB-related). REVEILLE circadian...	0.03	OrthoFinder output from all 47 species
LOC_Os06g51260.1	RVE2, CIR1,...	transcription factor (MYB-related)	0.03	OrthoFinder output from all 47 species
LOC_Os08g06110.3	LHY1, LHY, LOC_Os08g06110	transcription factor (MYB-related). circadian clock core...	0.05	OrthoFinder output from all 47 species
Len_g19700	RVE1	transcription factor *(REVEILLE) & original description: none	0.04	OrthoFinder output from all 47 species
MA_11267g0020	RVE1	transcription factor (MYB-related). circadian clock core...	0.05	OrthoFinder output from all 47 species
Mp2g14310.1	No alias	transcription factor (MYB-related). REVEILLE circadian...	0.03	OrthoFinder output from all 47 species
Ppi_g11968	No alias	transcription factor *(REVEILLE) & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g42013	RVE2, CIR1	transcription factor *(REVEILLE) & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0034.g011198	No alias	circadian clock factor *(REVEILLE) & original...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0048.g013571	RVE1	transcription factor *(REVEILLE) & original description:...	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0053.g014166	RVE2, CIR1	transcription factor *(REVEILLE) & original description:...	0.03	OrthoFinder output from all 47 species
Sam_g49740	No alias	transcription factor *(REVEILLE) & original description: none	0.06	OrthoFinder output from all 47 species
Smo166821	No alias	Multi-process regulation.circadian clock.core oscillator...	0.03	OrthoFinder output from all 47 species
Solyc02g036370.3.1	RVE1, Solyc02g036370	transcription factor (MYB-related)	0.07	OrthoFinder output from all 47 species
Solyc03g098320.4.1	RVE1, Solyc03g098320	transcription factor (MYB-related)	0.13	OrthoFinder output from all 47 species
Solyc10g005080.3.1	LHY1, LHY, Solyc10g005080	transcription factor (MYB-related). circadian clock core...	0.18	OrthoFinder output from all 47 species
Solyc10g084370.3.1	Solyc10g084370	transcription factor (MYB-related). REVEILLE circadian...	0.12	OrthoFinder output from all 47 species
Tin_g38661	No alias	circadian clock factor *(REVEILLE) & original description: none	0.07	OrthoFinder output from all 47 species
Zm00001e013333_P002	RVE2, CIR1,...	transcription factor (MYB-related)	0.06	OrthoFinder output from all 47 species
Zm00001e021724_P005	LHY1, LHY, Zm00001e021724	transcription factor (MYB-related). circadian clock core...	0.05	OrthoFinder output from all 47 species
Zm00001e023232_P002	Zm00001e023232	transcription factor (MYB-related). REVEILLE circadian...	0.07	OrthoFinder output from all 47 species
Zm00001e040217_P001	LHY1, LHY, Zm00001e040217	circadian clock core oscillator protein (LHY\|CCA1)	0.04	OrthoFinder output from all 47 species
Zm00001e041379_P001	RVE1, Zm00001e041379	transcription factor (MYB-related)	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IDA	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	IMP	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	RCA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006970	response to osmotic stress	None	Extended
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0007623	circadian rhythm	IEP	Interproscan
BP	GO:0007623	circadian rhythm	RCA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009648	photoperiodism	None	Extended
BP	GO:0009651	response to salt stress	RCA	Interproscan
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009723	response to ethylene	RCA	Interproscan
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009733	response to auxin	RCA	Interproscan
BP	GO:0009734	auxin-activated signaling pathway	IMP	Interproscan
BP	GO:0009737	response to abscisic acid	RCA	Interproscan
BP	GO:0009739	response to gibberellin	RCA	Interproscan
BP	GO:0009751	response to salicylic acid	RCA	Interproscan
BP	GO:0009753	response to jasmonic acid	RCA	Interproscan
BP	GO:0009755	hormone-mediated signaling pathway	None	Extended
BP	GO:0009850	auxin metabolic process	None	Extended
BP	GO:0009851	auxin biosynthetic process	IMP	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010600	regulation of auxin biosynthetic process	IMP	Interproscan
BP	GO:0010817	regulation of hormone levels	None	Extended
BP	GO:0014070	response to organic cyclic compound	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032350	regulation of hormone metabolic process	None	Extended
BP	GO:0033993	response to lipid	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0042445	hormone metabolic process	None	Extended
BP	GO:0042446	hormone biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0046885	regulation of hormone biosynthetic process	None	Extended
BP	GO:0048511	rhythmic process	None	Extended
BP	GO:0048571	long-day photoperiodism	None	Extended
BP	GO:0048573	photoperiodism, flowering	None	Extended
BP	GO:0048574	long-day photoperiodism, flowering	RCA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0070542	response to fatty acid	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090354	regulation of auxin metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097305	response to alcohol	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0008270	zinc ion binding	IEP	HCCA
BP	GO:0009266	response to temperature stimulus	IEP	HCCA
BP	GO:0009409	response to cold	IEP	HCCA
BP	GO:0009639	response to red or far red light	IEP	HCCA
BP	GO:0009909	regulation of flower development	IEP	HCCA
BP	GO:0010038	response to metal ion	IEP	HCCA
BP	GO:0010099	regulation of photomorphogenesis	IEP	HCCA
BP	GO:0010100	negative regulation of photomorphogenesis	IEP	HCCA
BP	GO:0010264	myo-inositol hexakisphosphate biosynthetic process	IEP	HCCA
MF	GO:0016160	amylase activity	IEP	HCCA
MF	GO:0016161	beta-amylase activity	IEP	HCCA
BP	GO:0019751	polyol metabolic process	IEP	HCCA
MF	GO:0019904	protein domain specific binding	IEP	HCCA
BP	GO:0032958	inositol phosphate biosynthetic process	IEP	HCCA
BP	GO:0033517	myo-inositol hexakisphosphate metabolic process	IEP	HCCA
BP	GO:0042752	regulation of circadian rhythm	IEP	HCCA
BP	GO:0042754	negative regulation of circadian rhythm	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
BP	GO:0043393	regulation of protein binding	IEP	HCCA
BP	GO:0043433	negative regulation of DNA-binding transcription factor activity	IEP	HCCA
BP	GO:0043496	regulation of protein homodimerization activity	IEP	HCCA
MF	GO:0043565	sequence-specific DNA binding	IEP	HCCA
BP	GO:0043647	inositol phosphate metabolic process	IEP	HCCA
BP	GO:0044092	negative regulation of molecular function	IEP	HCCA
BP	GO:0046165	alcohol biosynthetic process	IEP	HCCA
BP	GO:0046173	polyol biosynthetic process	IEP	HCCA
BP	GO:0046686	response to cadmium ion	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
BP	GO:0048519	negative regulation of biological process	IEP	HCCA
BP	GO:0048580	regulation of post-embryonic development	IEP	HCCA
BP	GO:0048581	negative regulation of post-embryonic development	IEP	HCCA
BP	GO:0048831	regulation of shoot system development	IEP	HCCA
BP	GO:0050793	regulation of developmental process	IEP	HCCA
BP	GO:0051090	regulation of DNA-binding transcription factor activity	IEP	HCCA
BP	GO:0051093	negative regulation of developmental process	IEP	HCCA
BP	GO:0051098	regulation of binding	IEP	HCCA
BP	GO:0051239	regulation of multicellular organismal process	IEP	HCCA
BP	GO:0051241	negative regulation of multicellular organismal process	IEP	HCCA
BP	GO:0065009	regulation of molecular function	IEP	HCCA
BP	GO:2000026	regulation of multicellular organismal development	IEP	HCCA
BP	GO:2000030	regulation of response to red or far red light	IEP	HCCA
BP	GO:2000241	regulation of reproductive process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001005	SANT/Myb	55	98

External Links

No external refs found!

AT5G17300 (RVE1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation